rename folder for summarized location/date counts

reichlab · Oct 8, 2024 · e757dcc · e757dcc
1 parent c9a571f
commit e757dcc
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/create-location-date-sequence-counts.yaml b/.github/workflows/create-location-date-sequence-counts.yaml
@@ -48,7 +48,7 @@ jobs:
           git config user.name "github-actions[bot]"
           git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
           git checkout -b new_location_date_sequence_counts_"$PR_DATETIME"
-          git add auxiliary-data/unscore-location-dates/
+          git add auxiliary-data/unscored-location-dates/
           git commit -m "Add sequence counts by location & date $PR_DATETIME"
           git push -u origin new_location_date_sequence_counts_"$PR_DATETIME"
           gh pr create \

diff --git a/...ata/unscore-location-dates/2024-10-02.csv → ...ta/unscored-location-dates/2024-10-02.csv b/...ata/unscore-location-dates/2024-10-02.csv → ...ta/unscored-location-dates/2024-10-02.csv
diff --git a/src/README.md b/src/README.md
@@ -65,7 +65,7 @@ To run the script manually (without RStudio):
 
 For each location used by this hub, `get_location_date_counts.py` generates a daily count of Sars-Cov-2 genome sequences collected.
 The output includes counts for each of the 31 days prior to the latest round's nowcast date (_i.e._, the round_id)
-This script writes its output to `auxiliary-data/unscore-location-dates/[round_id].csv`.
+This script writes its output to `auxiliary-data/unscored-location-dates/[round_id].csv`.
 
 To run the script manually:
 

diff --git a/src/get_location_date_counts.py b/src/get_location_date_counts.py
@@ -132,6 +132,6 @@ def test_counts(round_close_time: datetime, computed_counts: pl.DataFrame):
     round_id = date_files[0].split(".")[0]
 
     output_path = (
-        Path(__file__).parents[1] / "auxiliary-data" / "unscore-location-dates"
+        Path(__file__).parents[1] / "auxiliary-data" / "unscored-location-dates"
     )
     main(round_id, output_path)