failed attempt to make, run test data locally

rnabioco · Mar 5, 2025 · 61cd47c · 61cd47c
1 parent 0ef3a2b
commit 61cd47c
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Showing 4 changed files with 6 additions and 3 deletions.
diff --git a/.test/dl_test_data.sh b/.test/dl_test_data.sh
@@ -1,6 +1,7 @@
 #!/bin/bash
 set -e
 
-wget https://aatrnaseq-testdata.s3.amazonaws.com/test_data.tar.gz
+curl -L -o test_data.tar.gz https://aatrnaseq-testdata.s3.amazonaws.com/test_data.tar.gz
+
 tar -zxvf test_data.tar.gz
-rm test_data.tar.gz
+rm test_data.tar.gz
diff --git a/config/config-uncharged.yml b/config/config-uncharged.yml
@@ -1,4 +1,6 @@
 # new config for running uncharged nanopore tRNA-seq libraries (to be edited)
+samples: "config/samples-test.tsv"
+
 # paths to basecalling models below (these will need to be added to resources dir unless we can point to Dorado install instead)
 base_calling_models:
   RNA002:

diff --git a/config/dag.png b/config/dag.png
diff --git a/config/samples-test.tsv b/config/samples-test.tsv
@@ -1,3 +1,3 @@
 sample1    .test/sample1
 sample2    .test/sample2
-sample2    .test/sample2_1
+