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Fix broken link in DART tutorial
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johnsonbk committed Dec 20, 2022
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29 changes: 24 additions & 5 deletions guide/matlab-observation-space.rst
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#####################################
MATLAB® observation space diagnostics
#####################################
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MATLAB observation space diagnostics
####################################

The observation-space functions are in the ``$DARTROOT/diagnostics/matlab``
directory. Once you have processed the ``obs_seq.final`` files into a single
Configuring MATLAB
==================

DART uses MATLAB's own netCDF reading and writing capability and does not use
any MATLAB or third-party toolboxes.

To allow your environment to seamlessly use the DART MATLAB functions, your
MATLAB path must be set to include two of the directories in the DART
repository. In the MATLAB command prompt enter the following, using the real
path to your DART installation:

.. code-block::
addpath('DART/diagnostics/matlab','-BEGIN')
addpath('DART/guide/DART_LAB/matlab','-BEGIN')
Summary of MATLAB functions
===========================

Once you have processed the ``obs_seq.final`` files into a single
``obs_diag_output.nc``, you can use that as input to your own plotting routines
or use the following DART MATLAB® routines:

Expand Down Expand Up @@ -241,3 +259,4 @@ the selected observations get highlighted there too.

.. |link obs example frame 0| image:: images/science_nuggets/link_obs_example_F0.png
:width: 100%

3 changes: 1 addition & 2 deletions theory/readme.rst
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Expand Up @@ -10,8 +10,7 @@ prerequisite statistical concepts by reading

The diagnostics in the tutorial use Matlab®. To learn how to configure your
environment to use Matlab and the DART diagnostics, see the documentation for
`Configuring Matlab® for netCDF & DART
<http://www.image.ucar.edu/DAReS/DART/DART2_Documentation.php#configure_matlab>`__.
:doc:`/guide/matlab-observation-space`.

- **Section 1:** `Filtering For a One Variable System <../_static/slides/section_01.pdf>`__
- **Section 2:** `The DART Directory Tree <../_static/slides/section_02.pdf>`__
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