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refit for custom_stan_model test, run-extended #655

refit for custom_stan_model test, run-extended

refit for custom_stan_model test, run-extended #655

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, threading]
pull_request:
branches: [main, threading]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macOS-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
# this sets the env variable to true or false depending on whether the
# commit message contains texts 'run-extended' and 'run-scaling'
DYNAMITE_EXTENDED_TESTS: ${{contains(github.event.head_commit.message, 'run-extended')}}
DYNAMITE_SCALING_TESTS: ${{contains(github.event.head_commit.message, 'run-scaling')}}
steps:
# alternative way to set up the environment variable
# - name: Set the value of DYNAMITE_EXTENDED_TESTS
# if: contains(github.event.head_commit.message, 'run-extended')
# run: |
# if [ "$RUNNER_OS" == "Windows" ]; then
# echo "DYNAMITE_EXTENDED_TESTS=1" >> $env:GITHUB_ENV
# else
# echo "DYNAMITE_EXTENDED_TESTS=1" >> $GITHUB_ENV
# fi
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
extra-repositories: |
https://mc-stan.org/r-packages/
r-version: ${{ matrix.config.r }}
rtools-version: ${{ matrix.config.rtools }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
cache-version: 2
extra-packages: |
rcmdcheck
BH
RcppParallel
RcppEigen
Rcpp
rstan
StanHeaders
stan-dev/cmdstanr
- name: Build CmdStan
run: |
cmdstanr::check_cmdstan_toolchain(fix = TRUE)
cmdstanr::install_cmdstan()
shell: Rscript {0}
- uses: r-lib/actions/check-r-package@v2