updated version

.Rhistory

@@ -1,13 +1,3 @@
-expect_error(mu_critical(model1$model),
-paste0("If model_fit contains site-level covariates, values ",
-"must be provided for cov_val"))
-#5. cov_val is numeric, if provided
-expect_error(mu_critical(model1$model, cov_val = c(TRUE, TRUE)),
-"cov_val must be a numeric vector")
-#6. Only include input cov_val if covariates are included in model
-expect_error(mu_critical(model3$model, cov_val = c(0, 0)),
-paste0("cov_val must be NULL if the model does not ",
-"contain site-level covariates."))
 #7. Only include input cov_val if covariates are included in model
 expect_error(mu_critical(model1$model, cov_val = c(0, 0, 0)),
 paste0("cov_val must be of the same length as the number of ",
@@ -510,3 +500,13 @@ lint('inst/stan/joint_continuous.stan')
 lint('inst/stan/joint_count.stan')
 lint('inst/stan/joint_count.stan')
 lint_package()
+library(lintr)
+lint_package()
+lint('inst/stan/functions/calc_loglik.stan')
+lint('inst/stan/functions/calc_loglik.stan')
+lint('inst/stan/functions/calc_loglik.stan')
+lint('inst/stan/functions/calc_loglik.stan')
+lint('inst/stan/functions/calc_loglik.stan')
+lint('inst/stan/functions/calc_mu.stan')
+lint('inst/stan/functions/calc_p11.stan')
+devtools::install()

codemeta.json

@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/ropensci/eDNAjoint",
   "issueTracker": "https://github.com/ropensci/eDNAjoint/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.2",
+  "version": "0.3",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",

configure.win

@@ -5,5 +5,5 @@
 "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe" -e "rstantools::rstan_config()"
 
 # Add configuration needed for big object files
-echo "PKG_CXXFLAGS += -Wa,-mbig-obj" >> ./src/Makevars.win
+# echo "PKG_CXXFLAGS += -Wa,-mbig-obj" >> ./src/Makevars.win