updated all vignettes, updated news, cran comments, and bumped to nex…

…t cran release version

.Rbuildignore

@@ -19,3 +19,4 @@ README.Rmd
 vignettes/figure
 ^CONDUCT\.md$
 user_test_cases/
+^cran-comments\.md$

DESCRIPTION

@@ -7,7 +7,7 @@ Description: Client for many 'NOAA' data sources including the 'NCDC' climate
     for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
     Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
     tornado data via the 'NOAA' storm prediction center, and more.
-Version: 0.5.9.9140
+Version: 0.6.0
 License: MIT + file LICENSE
 Encoding: UTF-8
 Authors@R: c(

NAMESPACE

@@ -120,7 +120,6 @@ importFrom(dplyr,bind_rows)
 importFrom(dplyr,contains)
 importFrom(dplyr,filter)
 importFrom(dplyr,mutate)
-importFrom(dplyr,rbind_all)
 importFrom(dplyr,rename)
 importFrom(dplyr,select)
 importFrom(dplyr,tbl_df)

NEWS.md

@@ -1,3 +1,46 @@
+rnoaa 0.6.0
+===============
+
+### NEW FEATURES
+
+* A large PR was merged with a suite of functions. Most functions added 
+a prefixed with `meteo_*`, and are meant to find weather monitors near 
+locations (`meteo_nearby_stations`), find all monitors within a radius 
+of a location (`meteo_distance`), calculate the distances between a 
+location and all available stations (`meteo_process_geographic_data`),  
+calculate the distance between two locations (`meteo_spherical_distance`),
+pull GHCND weather data for multiple weather monitors (`meteo_pull_monitors`), 
+create a tidy GHCND dataset from a single monitor (`meteo_tidy_ghcnd`), 
+and determine the "coverage" for a station data frame (`meteo_coverage()`). 
+In addition, `vis_miss()` added to visualize missingness in a data.frame. See 
+the [PR diff against master](https://github.com/ropensci/rnoaa/pull/159/files)
+for all the changes. (#159) Thanks a ton to @geanders _et al_. (@hrbrmstr, 
+@masalmon, @jdunic, @njtierney, @leighseverson, @RyanGan, @mandilin, @jferreri, 
+@cpatrizio88, @ryan-hicks, @Ewen2015, @mgutilla, @hakessler, @rodlammers)
+
+### MINOR IMPROVEMENTS
+
+* `isd_stations_search()` changed internal structure. We replaced 
+usage of `geojsonio` and `lawn` for faster `dplyr::filter` for 
+bbox inputs, and `meteo_distance()` for `lat/long/radius` inputs
+. This speeds up this function significantly. Thanks to @lukas-rokka 
+(#157)
+* `isd_stations_search()` and `isd_stations()` now return 
+tibble's instead of data.frame's
+* Removed cached ISD stations dataset within package to reduce
+package size. Only change is now that on first use of the function
+the user has to download the entire thing, but on subsquent 
+uses it will pull from the cached version on the users machine. 
+`isd_stations_search()` now caches using `rappdirs` (#161)
+* Convert all `is()` uses to `inherits()`
+
+### BUG FIXES
+
+* Fixed `seaiceeurls()` function that's used to generate urls for 
+the `seaice()` function - due to change in NOAA urls (#160)
+* Fix to function `ghncd_split_vars()` to not fail on `dplyr::contains` 
+call (#156) thanks @lawinslow !
+
 rnoaa 0.5.6
 ===============
 
@@ -6,24 +49,24 @@ rnoaa 0.5.6
 * Fixes for new `httr` version to call encoding explicitly (#135)
 * Fix to broken link for reference to source code used in `gefs` functions (#121)
 * Speed ups implemented for the `isd()` function - it's a time consuming task
-as we have to parse a nasty string of characters line by line - more speed 
+as we have to parse a nasty string of characters line by line - more speed
 ups to come in future versions (#146)
 * Replace `dplyr::rbind_all()` with `dplyr::bind_rows()` as the former is
 being deprecated (#152)
 
 ### BUG FIXES
 
-* Fix for `isd()` function - was failing on some station names that had 
+* Fix for `isd()` function - was failing on some station names that had
 leading zeros. (#136)
-* Fix for `ncdc_stations()` - used to allow more than one station id to 
-be passed in, but internally only handled one. This is a restriction 
-due to the NOAA NCDC API. Documentation now shows an example of how 
+* Fix for `ncdc_stations()` - used to allow more than one station id to
+be passed in, but internally only handled one. This is a restriction
+due to the NOAA NCDC API. Documentation now shows an example of how
 to deal with many station ids (#138)
 * Fixes to the suite of `ncdc_*()` functions to allow multiple inputs
 to those parameters where allowed (#139)
 * Fixed bug in `ncdc_plot()` due to new `ggplot2` version (#153)
-* Fixed bugs in `argo()` functions: a) with new `httr`, box input of a vector 
-no longer works, now manually make a character vector; b) errant file param 
+* Fixed bugs in `argo()` functions: a) with new `httr`, box input of a vector
+no longer works, now manually make a character vector; b) errant file param
 being passed into the http request, removed (#155)
 
 rnoaa 0.5.2
@@ -33,7 +76,7 @@ rnoaa 0.5.2
 
 * New data source added: ARGO buoy data. See functions starting with `argo()` (#123)
 for more, see http://www.argo.ucsd.edu/
-* New data source added: CO-OPS tide and current data. See function `coops_search()` 
+* New data source added: CO-OPS tide and current data. See function `coops_search()`
 (#111) for idea from @fmichonneau (#124) for implementing @jsta See http://co-ops.nos.noaa.gov/api/
 also (#126) (#128)
 
@@ -48,35 +91,35 @@ rnoaa 0.5.0
 
 ### NEW FEATURES
 
-* New data source added: NOAA Global Ensemble Forecast System (GEFS) data. 
-See functions `gefs()`, `gefs_dimension_values()`, `gefs_dimensions()`, `gefs_latitudes()`, 
-`gefs_longitudes()`, and `gefs_variables()` (#106) (#119)  thanks @potterzot - he's 
+* New data source added: NOAA Global Ensemble Forecast System (GEFS) data.
+See functions `gefs()`, `gefs_dimension_values()`, `gefs_dimensions()`, `gefs_latitudes()`,
+`gefs_longitudes()`, and `gefs_variables()` (#106) (#119)  thanks @potterzot - he's
 now an author too
-* New data source added: NOAA Extended Reconstructed Sea Surface Temperature 
+* New data source added: NOAA Extended Reconstructed Sea Surface Temperature
 (ERSST) data. See function `ersst()` (#96)
 * New function `isd_stations()` to get ISD station data.
 * Added code of conduct to code repository
 
 ### MINOR IMPROVEMENTS
 
-* Swapped `ncdf` package for `ncdf4` package. Windows binaries weren't 
+* Swapped `ncdf` package for `ncdf4` package. Windows binaries weren't
 availiable for `ncdf4` prior to now. (#117)
 * Proper license info added for javascript modules used inside the
 package (#116)
-* Improvements to `isd()` function to do transformations of certain 
+* Improvements to `isd()` function to do transformations of certain
 variables to give back data that makes more sense (#115)
-* `leaflet`, `geojsonio`, and `lawn` added in Suggests, used in a few 
+* `leaflet`, `geojsonio`, and `lawn` added in Suggests, used in a few
 functions.
-* Note added to `swdi()` function man page that the `nldn` dataset is 
+* Note added to `swdi()` function man page that the `nldn` dataset is
 available to military users only (#107)
 
 ### BUG FIXES
 
-* Fix to `buoy()` function to accept character class inputs for the 
-`buoyid` parameter. the error occurred because matching was not 
+* Fix to `buoy()` function to accept character class inputs for the
+`buoyid` parameter. the error occurred because matching was not
 case-insensitive, now works regardless of case (#118)
 * Fixes for new `ggplot2` version (#113)
-* Built in `GET` request retries for `ghncd` functions as 
+* Built in `GET` request retries for `ghncd` functions as
 some URLs fail unpredictably (#110)
 
 rnoaa 0.4.2

R/isd_stations_search.R

@@ -71,6 +71,6 @@ isd_stations_search <- function(lat = NULL, lon = NULL, radius = NULL, bbox = NU
     filter(stations, lat >= bbox[2] & lat <= bbox[4], lon >= bbox[1] & lon <= bbox[3])
   } else {
     stations <- rename(stations, latitude = lat, longitude = lon)
-    meteo_distance(stations, lat, lon, radius = radius)
+    meteo_distance(stations, lat = lat, long = lon, radius = radius)
   }
 }

R/ncdc_plot.r

@@ -65,7 +65,7 @@ ncdc_plot.ncdc_data <- function(..., breaks = NULL, dateformat='%d/%m/%y') {
 }
 
 #' @export
-ncdc_plot.default <- function(...,  breaks = NULL, dateformat='%d/%m/%y') {
+ncdc_plot.default <- function(...,  breaks = NULL, dateformat = '%d/%m/%y') {
   stop("No method for ", class(list(...)[[1]]), call. = FALSE)
 }
 
@@ -77,7 +77,6 @@ plot_template <- function(df, breaks, dateformat) {
   )
   if (!is.null(breaks)) {
     c(tt, scale_x_date(date_breaks = breaks, date_labels = dateformat))
-
   } else {
     tt
   }

R/rnoaa-package.r

@@ -60,7 +60,7 @@
 #' @importFrom tidyr gather
 #' @importFrom rappdirs user_cache_dir
 #' @importFrom gridExtra grid.arrange
-#' @importFrom dplyr %>% rbind_all select mutate rename tbl_df filter bind_rows
+#' @importFrom dplyr %>% select mutate rename tbl_df filter bind_rows
 #' as_data_frame contains
 #' @importFrom tibble as_data_frame
 #' @importFrom scales comma

cran-comments.md

@@ -1,7 +1,27 @@
-R CMD CHECK passed on my local OS X install on R 3.3.0 and R development
-version, Ubuntu running on Travis-CI, and Win builder.
+## Test environments
 
-This submission makes some fixes for new versions of dependencies,
-and fixes a series of bugs.
+* local OS X install, R 3.3.1
+* ubuntu 12.04 (on travis-ci), R 3.3.1
+* win-builder (devel and release)
 
-Thanks! Scott Chamberlain
+## R CMD check results
+
+0 errors | 0 warnings | 1 note
+
+   License components with restrictions and base license permitting such:
+     MIT + file LICENSE
+   File 'LICENSE':
+     YEAR: 2016
+     COPYRIGHT HOLDER: Scott Chamberlain
+
+## Reverse dependencies
+
+There are no reverse dependencies.
+
+-----
+
+This release adds some new functions, improves performance
+in a function, fixes a few bugs.
+
+Thanks!
+Scott Chamberlain

inst/vign/buoy_vignette.md

@@ -73,18 +73,18 @@ buoy(dataset = 'cwind', buoyid = 46085)
 #> Dimensions (rows/cols): [33486 X 5] 
 #> 2 variables: [wind_dir, wind_spd] 
 #> 
-#>                    time latitude longitude wind_dir wind_spd
-#> 1  2007-05-05T02:00:00Z   55.855  -142.559      331      2.8
-#> 2  2007-05-05T02:10:00Z   55.855  -142.559      328      2.6
-#> 3  2007-05-05T02:20:00Z   55.855  -142.559      329      2.2
-#> 4  2007-05-05T02:30:00Z   55.855  -142.559      356      2.1
-#> 5  2007-05-05T02:40:00Z   55.855  -142.559      360      1.5
-#> 6  2007-05-05T02:50:00Z   55.855  -142.559       10      1.9
-#> 7  2007-05-05T03:00:00Z   55.855  -142.559       10      2.2
-#> 8  2007-05-05T03:10:00Z   55.855  -142.559       14      2.2
-#> 9  2007-05-05T03:20:00Z   55.855  -142.559       16      2.1
-#> 10 2007-05-05T03:30:00Z   55.855  -142.559       22      1.6
-#> ..                  ...      ...       ...      ...      ...
+#>                    time    lat      lon wind_dir wind_spd
+#> 1  2007-05-05T02:00:00Z 55.855 -142.559      331      2.8
+#> 2  2007-05-05T02:10:00Z 55.855 -142.559      328      2.6
+#> 3  2007-05-05T02:20:00Z 55.855 -142.559      329      2.2
+#> 4  2007-05-05T02:30:00Z 55.855 -142.559      356      2.1
+#> 5  2007-05-05T02:40:00Z 55.855 -142.559      360      1.5
+#> 6  2007-05-05T02:50:00Z 55.855 -142.559       10      1.9
+#> 7  2007-05-05T03:00:00Z 55.855 -142.559       10      2.2
+#> 8  2007-05-05T03:10:00Z 55.855 -142.559       14      2.2
+#> 9  2007-05-05T03:20:00Z 55.855 -142.559       16      2.1
+#> 10 2007-05-05T03:30:00Z 55.855 -142.559       22      1.6
+#> ..                  ...    ...      ...      ...      ...
 ```
 
 Including year
@@ -98,18 +98,18 @@ buoy(dataset = 'cwind', buoyid = 41001, year = 1999)
 #> Dimensions (rows/cols): [52554 X 5] 
 #> 2 variables: [wind_dir, wind_spd] 
 #> 
-#>                    time latitude longitude wind_dir wind_spd
-#> 1  1999-01-01T00:00:00Z    34.68    -72.66      272     11.7
-#> 2  1999-01-01T00:10:00Z    34.68    -72.66      260     11.0
-#> 3  1999-01-01T00:20:00Z    34.68    -72.66      249      8.7
-#> 4  1999-01-01T00:30:00Z    34.68    -72.66      247      8.4
-#> 5  1999-01-01T00:40:00Z    34.68    -72.66      240      7.1
-#> 6  1999-01-01T00:50:00Z    34.68    -72.66      242      7.9
-#> 7  1999-01-01T01:00:00Z    34.68    -72.66      246      8.3
-#> 8  1999-01-01T01:10:00Z    34.68    -72.66      297     10.9
-#> 9  1999-01-01T01:20:00Z    34.68    -72.66      299     11.3
-#> 10 1999-01-01T01:30:00Z    34.68    -72.66      299     11.1
-#> ..                  ...      ...       ...      ...      ...
+#>                    time   lat    lon wind_dir wind_spd
+#> 1  1999-01-01T00:00:00Z 34.68 -72.66      272     11.7
+#> 2  1999-01-01T00:10:00Z 34.68 -72.66      260     11.0
+#> 3  1999-01-01T00:20:00Z 34.68 -72.66      249      8.7
+#> 4  1999-01-01T00:30:00Z 34.68 -72.66      247      8.4
+#> 5  1999-01-01T00:40:00Z 34.68 -72.66      240      7.1
+#> 6  1999-01-01T00:50:00Z 34.68 -72.66      242      7.9
+#> 7  1999-01-01T01:00:00Z 34.68 -72.66      246      8.3
+#> 8  1999-01-01T01:10:00Z 34.68 -72.66      297     10.9
+#> 9  1999-01-01T01:20:00Z 34.68 -72.66      299     11.3
+#> 10 1999-01-01T01:30:00Z 34.68 -72.66      299     11.1
+#> ..                  ...   ...    ...      ...      ...
 ```
 
 Including year and datatype
@@ -123,18 +123,18 @@ buoy(dataset = 'cwind', buoyid = 41001, year = 2008, datatype = "cc")
 #> Dimensions (rows/cols): [1585 X 5] 
 #> 2 variables: [wind_dir, wind_spd] 
 #> 
-#>                    time latitude longitude wind_dir wind_spd
-#> 1  2008-05-28T16:00:00Z   34.704   -72.734      230      8.6
-#> 2  2008-05-28T16:10:00Z   34.704   -72.734      230      8.7
-#> 3  2008-05-28T16:20:00Z   34.704   -72.734      229      8.5
-#> 4  2008-05-28T16:30:00Z   34.704   -72.734      231      8.8
-#> 5  2008-05-28T16:40:00Z   34.704   -72.734      236      8.5
-#> 6  2008-05-28T16:50:00Z   34.704   -72.734      235      8.9
-#> 7  2008-05-28T17:00:00Z   34.704   -72.734      233      8.2
-#> 8  2008-05-28T17:10:00Z   34.704   -72.734      233      8.2
-#> 9  2008-05-28T17:20:00Z   34.704   -72.734      231      8.3
-#> 10 2008-05-28T17:30:00Z   34.704   -72.734      232      7.8
-#> ..                  ...      ...       ...      ...      ...
+#>                    time    lat     lon wind_dir wind_spd
+#> 1  2008-05-28T16:00:00Z 34.704 -72.734      230      8.6
+#> 2  2008-05-28T16:10:00Z 34.704 -72.734      230      8.7
+#> 3  2008-05-28T16:20:00Z 34.704 -72.734      229      8.5
+#> 4  2008-05-28T16:30:00Z 34.704 -72.734      231      8.8
+#> 5  2008-05-28T16:40:00Z 34.704 -72.734      236      8.5
+#> 6  2008-05-28T16:50:00Z 34.704 -72.734      235      8.9
+#> 7  2008-05-28T17:00:00Z 34.704 -72.734      233      8.2
+#> 8  2008-05-28T17:10:00Z 34.704 -72.734      233      8.2
+#> 9  2008-05-28T17:20:00Z 34.704 -72.734      231      8.3
+#> 10 2008-05-28T17:30:00Z 34.704 -72.734      232      7.8
+#> ..                  ...    ...     ...      ...      ...
 ```
 
 Including just datatype
@@ -148,16 +148,16 @@ buoy(dataset = 'cwind', buoyid = 41001, datatype = "cc")
 #> Dimensions (rows/cols): [1585 X 5] 
 #> 2 variables: [wind_dir, wind_spd] 
 #> 
-#>                    time latitude longitude wind_dir wind_spd
-#> 1  2008-05-28T16:00:00Z   34.704   -72.734      230      8.6
-#> 2  2008-05-28T16:10:00Z   34.704   -72.734      230      8.7
-#> 3  2008-05-28T16:20:00Z   34.704   -72.734      229      8.5
-#> 4  2008-05-28T16:30:00Z   34.704   -72.734      231      8.8
-#> 5  2008-05-28T16:40:00Z   34.704   -72.734      236      8.5
-#> 6  2008-05-28T16:50:00Z   34.704   -72.734      235      8.9
-#> 7  2008-05-28T17:00:00Z   34.704   -72.734      233      8.2
-#> 8  2008-05-28T17:10:00Z   34.704   -72.734      233      8.2
-#> 9  2008-05-28T17:20:00Z   34.704   -72.734      231      8.3
-#> 10 2008-05-28T17:30:00Z   34.704   -72.734      232      7.8
-#> ..                  ...      ...       ...      ...      ...
+#>                    time    lat     lon wind_dir wind_spd
+#> 1  2008-05-28T16:00:00Z 34.704 -72.734      230      8.6
+#> 2  2008-05-28T16:10:00Z 34.704 -72.734      230      8.7
+#> 3  2008-05-28T16:20:00Z 34.704 -72.734      229      8.5
+#> 4  2008-05-28T16:30:00Z 34.704 -72.734      231      8.8
+#> 5  2008-05-28T16:40:00Z 34.704 -72.734      236      8.5
+#> 6  2008-05-28T16:50:00Z 34.704 -72.734      235      8.9
+#> 7  2008-05-28T17:00:00Z 34.704 -72.734      233      8.2
+#> 8  2008-05-28T17:10:00Z 34.704 -72.734      233      8.2
+#> 9  2008-05-28T17:20:00Z 34.704 -72.734      231      8.3
+#> 10 2008-05-28T17:30:00Z 34.704 -72.734      232      7.8
+#> ..                  ...    ...     ...      ...      ...
 ```