Skip to content

rosalindfranklininstitute/napari-h5

Repository files navigation

napari-h5

License Apache Software License 2.0 PyPI Python Version tests napari hub

A file reader plugin for napari

It opens simple *.h5 files. Reads all Datasets inside the file and converts to a napari Image object (np.array).

It can also save "image" or "labels" data. Note that these will be saved individually.

It does not support data organised internally in "groups". For these more complicated h5 data structures please try other plugins.


This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-h5 via pip:

pip install napari-h5

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the Apache Software License 2.0 license, "napari-h5" is free and open source software

Issues

If you encounter any problems, please [file an issue] along with a detailed description.

About

Napari plugin to help read hdf5 files

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages