pophelper_v2.3.1

• 28-Dec-2020
• Min req R-3.5.
• Error bars in first plot of Evanno method showed max/min rather than SD. Fixed to show SD.
• Input and output directories are to be specified explicitly by user as per CRAN guidelines
• cat and print statements replaced with message or warning
• Argument 'quiet' removed in all functions
• Fixed dependency issues
• Automatic CI testing added
• Fixed an issue where runs merged using mergeQ() produced a warning about missing attributes.
• In function clumppExport() and distructExport(), argument 'path' changed to 'exportpath' to be consistent with other functions.
• Legend is now sorted numerically
• Fixed minor errors in documentation.

pophelper_v2.3.0

• CLUMPP and DISTRUCT executables removed and useexe deprecated
• Function alignK() aligns clusters within and across K
• Helper functions joinQ(), mergeQ(), splitQ(), sortQ() and as.qlist() added
• Added 'legendrow' and 'legendspacing' to function plotQ()

For full list of changes see news.
Updated changes are covered in the vignette.

pophelper_v2.2.9

Fixed an issue in plotQ() where the order of runs in a joined plot was incorrect when k>10 and grplab in use.

pophelper_v2.2.8.1

• Fixed 'exportpath' issues in plotQ()
• Added 'exportpath' to tabulateQ(), summariseQ(), plotQMultiline() and evannoMethod()

pophelper_v2.2.8

• R dependency set to >=3.5.0
• Dropped dependency on package cairo
• summariseQ() accepts single run tabulated input
• evannoMethodStructure(): Argument 'file' incorrectly specified for pdf as 'filename'. Fixed
• plotQMultiline(): Several undocumented arguments added to documentation
• Minor corrections to documentation
• Adjustments to getDim()
• plotQ(): Added argument 'showgrplab' to hide group labels when in use
• readQ() and readQStructure(): Reads confidence intervals from structure files if available

For full list of changes see news.
Updated changes (reading confidence interval) are covered under readQ in the vignette.

pophelper_v2.2.7.1

• plotQ(): Removed restriction of setting 'ordergrp=T' when sorting by cluster or 'all'.

pophelper_v2.2.7

• plotQ(): With joined plots, group labels and sorting, div lines were incorrectly printed causing plots to be misaligned. This has been resolved.

pophelper_v2.2.6

• R requirement set to 3.4.0
• plotQ(): Argument 'grplabface' added to adjust font face of group labels
• plotQ(): Div lines are printed with joined plots, group labels and sorting
• plotQ(): Argument 'ordergrp' must be set to TRUE when using joined plots + group labels + sorting

For full list of changes see news.
Updated changes are covered in the vignette.

pophelper_v2.2.5.1

• Added arguments 'xaxisbreaks' and 'xaxislabels' to evannoMethodStructure()

pophelper_v2.2.5

• A bug in plotQ() caused strip labels to be incorrect. This has been fixed
• plotQMultiline() subtitle by default prints the K value of the run
• plotQ() and plotQMultiline() prints 'Drawing plot ...' when exporting plot

For full list of changes see news.
Updated changes are covered in the vignette.