v2328

CHANGES.txt

@@ -1,4 +1,12 @@
 ## START
+v2328
+ - NOTE that queries of type 1 may not work as expected due to an issue at S2
+ - implement query type 2
+ - remove unused features from type 1 query cards
+ - try to handle SSLException
+ - fix: query type 1 stopped at 2000
+ - fix: query type 1 shows no progress indicator
+
 v2327
  - bulk access via S2API keys
  - new query type: bulk expression search (requires S2API key)

TODO.txt

@@ -5,18 +5,13 @@
                          estimat* OR classificat*)
 
 Doc:
- - expr search
  - reasons why not all papers found:
    - start set not representative or not highly cited
    - missing keywords
    - local Chinese papers are underrepresented in S2
 
 Features:
  - file selectors in settings dialog
- - three types of queries:
-   1. snowballing with supervision on each round,
-   2. snowballing without supervision, needs a stop criterion
-   3. simple logical expression matching
  - recipes: export to / start / import from annotation tool --- both in filter2
  - in filter2()  Prodigy
  - in annotate() export to / start / import from Prodigy
@@ -26,6 +21,7 @@ Features:
  - optional wordnet capability to include synonyms
  - clicking sort in filtering2 still grabs focus
  - new query from old (allowing change of keywords but shortcutting some download)
+ - don't discard non-DOI expr search results / use archived directly?
 
 Other ideas:
  - replace 404 msg with "Paper not found"

build.gradle.kts

@@ -111,7 +111,7 @@ dependencies {
 buildConfig {
     packageName("org.reactome.lit_ball")  // forces the package. Defaults to '${project.group}'
     buildConfigField("String", "APP_NAME", "\"LitBall\"")
-    buildConfigField("String", "APP_VERSION", provider { "\"2327\"" })
+    buildConfigField("String", "APP_VERSION", provider { "\"2328\"" })
 }
 
 configurations.all {
@@ -123,7 +123,7 @@ configurations.all {
 compose.desktop {
     application {
         mainClass = "MainKt"
-        version = "2327"
+        version = "2328"
         group = "org.reactome"
         nativeDistributions {
             targetFormats(TargetFormat.Dmg, TargetFormat.Msi, TargetFormat.Deb)

src/main/kotlin/org/reactome/lit_ball/common/Changes.kt

@@ -2,6 +2,14 @@ package org.reactome.lit_ball.common
 
 object Changes {
     val text = """
+v2328
+ - NOTE that queries of type 1 may not work as expected due to an issue at S2
+ - implement query type 2
+ - remove unused features from type 1 query cards
+ - try to handle SSLException
+ - fix: query type 1 stopped at 2000
+ - fix: query type 1 shows no progress indicator
+
 v2327
  - bulk access via S2API keys
  - new query type: bulk expression search (requires S2API key)