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Remove clip from alignment plot
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The clip isn't beneficial when one wants to see the plot as a whole.
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Icemole authored Jul 18, 2024
1 parent 3b48a7f commit 6d0a402
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1 change: 0 additions & 1 deletion mm/alignment.py
Original file line number Diff line number Diff line change
Expand Up @@ -166,7 +166,6 @@ def plot(self):

# Plot the data.
matplotlib.use("Agg")
np.clip(np_alignment_scores, np_alignment_scores.min(), higher_percentile, out=np_alignment_scores)
plt.hist(np_alignment_scores, bins=100)
plt.xlabel("Average Maximum-Likelihood Score")
plt.ylabel("Number of Segments")
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