Merge branch 'master' of github.com:saalfeldlab/hot-knife

saalfeldlab · Feb 16, 2024 · 8afd9f6 · 8afd9f6
2 parents f6a51f3 + a2a63c6
commit 8afd9f6
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Showing 4 changed files with 4 additions and 5 deletions.
diff --git a/run_scripts/multi-sem/wafer-52/72_spark_extract_face.sh b/run_scripts/multi-sem/wafer-52/72_spark_extract_face.sh
@@ -51,7 +51,6 @@ ARGV="\
 --size=${SIZE} \
 --invert \
 --normalizeContrast \
---maxDownsamplingLevel 5
 --blockSize=1024,1024"
 
 CLASS="org.janelia.saalfeldlab.hotknife.SparkGenerateFaceScaleSpace"

diff --git a/run_scripts/multi-sem/wafer-52/81_view_aligned_slab_series.sh b/run_scripts/multi-sem/wafer-52/81_view_aligned_slab_series.sh
@@ -39,7 +39,7 @@ JAR="${FLYEM_DATA_ROOT}/render/lib/hot-knife.latest-fat.jar"
 CLASS="org.janelia.saalfeldlab.hotknife.ViewAlignedSlabSeries"
 
 N5_PATH="/nrs/hess/render/export/hess.n5"
-TRANSFORM_GROUP="/surface-align/run_20230330_092301/pass12"
+TRANSFORM_GROUP="/surface-align/run_20230404_105038/pass12"
 
 
 ARGV="\

diff --git a/run_scripts/multi-sem/wafer-52/91_export_aligned_slab_series_batch.sh b/run_scripts/multi-sem/wafer-52/91_export_aligned_slab_series_batch.sh
@@ -30,8 +30,8 @@ export RUNTIME=${3:-4320} # default is minutes in 3 days
 # setup export parameters
 
 N5_PATH="/nrs/hess/render/export/hess.n5"
-TRANSFORM_GROUP="/surface-align/run_20230330_092301/pass12"
-DATA_SET_OUTPUT="/wafer-52-align/run_20230330_092301/pass12/s0"
+TRANSFORM_GROUP="/surface-align/run_20230404_105038/pass12"
+DATA_SET_OUTPUT="/wafer-52-align/run_20230404_105038/pass12/s0"
 
 ARGV="\
 --n5PathInput ${N5_PATH} \

diff --git a/run_scripts/multi-sem/wafer-52/99_spark_downsample_final.sh b/run_scripts/multi-sem/wafer-52/99_spark_downsample_final.sh
@@ -15,7 +15,7 @@ source "${SCRIPT_DIR}/00_config.sh" "ALL"
 
 #export RUNTIME="3:59"
 
-INPUT_DATASET_ROOT="/wafer-52-align/run_20230330_092301/pass12"
+INPUT_DATASET_ROOT="/wafer-52-align/run_20230404_105038/pass12"
 
 OUTPUT_DATASET_PATHS="${INPUT_DATASET_ROOT}/s1"
 FACTORS="2,2,1"