update surface align pass 0 script to new flat_clahe faces, change ma…

…xError to 320 as was done by innerberger
saalfeldlab · Jun 4, 2024 · bb8a645 · bb8a645
1 parent a11c76d
commit bb8a645
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diff --git a/run_scripts/multi-sem/wafer-53-center7/73_spark_surface_align_pass_0.sh b/run_scripts/multi-sem/wafer-53-center7/73_spark_surface_align_pass_0.sh
@@ -13,7 +13,7 @@ N5_GROUP_OUTPUT="${N5_SURFACE_ROOT}/pass00"
 # Face dataset order is important.
 unset FACE_DATASET_ARGS
 for SLAB in ${ALL_SLABS}; do
-  FACE_DATASET_ARGS="${FACE_DATASET_ARGS} -d /flat/${SLAB}/top4/face_local-inverted -d /flat/${SLAB}/bot4/face_local-inverted"
+  FACE_DATASET_ARGS="${FACE_DATASET_ARGS} -d /flat_clahe/${SLAB}/top4i/face -d /flat_clahe/${SLAB}/bot4i/face"
 done
 
 # need scaleIndex=5 for larger wafer 53 slabs
@@ -22,7 +22,7 @@ ARGV="
 --n5GroupOutput=${N5_GROUP_OUTPUT} \
 --scaleIndex=5 \
 --iterations 100000 \
---maxError 300 \
+--maxError 320 \
 --filter RANSAC \
 ${FACE_DATASET_ARGS}"
 

diff --git a/...nter7/73_mi_spark_surface_align_pass_0.sh → ...7/old/73_mi_spark_surface_align_pass_0.sh b/...nter7/73_mi_spark_surface_align_pass_0.sh → ...7/old/73_mi_spark_surface_align_pass_0.sh