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v0.13.11

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@deeenes deeenes released this 22 Nov 14:42
· 1132 commits to master since this release
  • New resources: scConnect, CellCall, Cellinker
  • Extra edge attributes (misc. resource specific interaction attributes) in the Network database
  • EWtra edge attributes in the web service: a column with JSON encoded arbitrary, resource specific edge attributes. This column can be accessed by the fields=extra_attrs GET parameter.
  • Complete revision of the inputs module: fixed most of the failing procedures, all the OmniPath resource can be downloaded, processed and used for database build without issue
  • inputs.main is empty, all resources have their own module within pypath.inputs
  • New ID translation resources in pypath.utils.mapping, especially for microarray probe IDs (Ensembl) and small molecule IDs (UniChem)
  • Besides NCBI HomoloGene, using also Ensembl BioMart for homology translation
  • Many small improvements & bug fixes