Corrects issue with small core genome

samhorsfield96 · Oct 14, 2024 · 1ac83f8 · 1ac83f8
1 parent 2be700b
commit 1ac83f8
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/panaroo_runner/generate_network.py b/panaroo_runner/generate_network.py
@@ -196,6 +196,10 @@ def generate_network(DBG, overlap, ORF_file_paths, Edge_file_paths, cluster_file
                     ],
                     paralog=has_paralogs,
                     mergedDNA=False)
+                # if has_paralogs == true, then need to add new node for each sequence
+                # otherwise can stop adding clusters
+                if not has_paralogs:
+                    add_cluster = False
 
                 # add to colour_to_nodes
                 if genome_id not in colour_to_nodes: