Corrects issue with writing protein sequence

samhorsfield96 · Oct 14, 2024 · 558cff8 · 558cff8
1 parent 2f32cec
commit 558cff8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/panaroo_runner/generate_output.py b/panaroo_runner/generate_output.py
@@ -536,7 +536,7 @@ def output_alignment_sequence(node_pair, temp_directory, outdir, shd_arr_tup, OR
         # generate protein sequence. If refound, add found protein sequence from find_missing.py
         ORF_info = ORF_info_dict[colour][ORF_ID]
         if ORF_ID < 0:
-            protein = Seq(ORF_info[4])
+            protein = Seq(ORF_info[5])
         else:
             protein = Seq(shd_arr[0].generate_sequence(ORF_info[0], ORF_info[1], overlap)).translate()