Replaced deprecated DPADJ/CNADJ fields in example

samtools · Jun 20, 2023 · 1a6fb6b · 1a6fb6b
1 parent 0dd3e0d
commit 1a6fb6b
Showing 1 changed file with 8 additions and 8 deletions.
diff --git a/VCFv4.4.tex b/VCFv4.4.tex
@@ -1583,10 +1583,10 @@ \subsubsection{Sample mixtures}
 \begin{flushleft}
 \begin{tabular}{ l l l l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO & FORMAT & Blood & TissueSample\\
-2 & 321681 & bnd\_W & G & G$]2:421681]$ & 6 & PASS & MATEID=bnd\_U & GT:DPADJ & 0:32 & $0|1:9,21$ \\
-2 & 321682 & bnd\_V & T & $[2:421682[$T & 6 & PASS & MATEID=bnd\_X & GT:DPADJ & 0:29 & $0|1:11,25$ \\
-13 & 421681 & bnd\_U & A & A$]2:321681]$ & 6 & PASS & MATEID=bnd\_W & GT:DPADJ & 0:34 & $0|1:10,23$ \\
-13 & 421682 & bnd\_X & C & $[2:321682[$C & 6 & PASS & MATEID=bnd\_V & GT:DPADJ & 0:31 & $0|1:8,20$ \\
+2 & 321681 & bnd\_W & G & G$]2:421681]$ & 6 & PASS & MATEID=bnd\_U & GT:AD & 0:32,0 & $0|1:9,21$ \\
+2 & 321682 & bnd\_V & T & $[2:421682[$T & 6 & PASS & MATEID=bnd\_X & GT:AD & 0:29,0 & $0|1:11,25$ \\
+13 & 421681 & bnd\_U & A & A$]2:321681]$ & 6 & PASS & MATEID=bnd\_W & GT:AD & 0:34,0 & $0|1:10,23$ \\
+13 & 421682 & bnd\_X & C & $[2:321682[$C & 6 & PASS & MATEID=bnd\_V & GT:AD & 0:31,0 & $0|1:8,20$ \\
 \end{tabular}
 \end{flushleft}
 \normalsize
@@ -1599,10 +1599,10 @@ \subsubsection{Sample mixtures}
 \begin{flushleft}
 \begin{tabular}{ l l l l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO & FORMAT & Blood & TumorSample \\
-2 & 321681 & bnd\_W & G & G$]2:421681]$ & 6 & PASS & MATEID=bnd\_U & GT:CNADJ & 0:1 & 1:1 \\
-2 & 321682 & bnd\_V & T & $[2:421682[$T & 6 & PASS & MATEID=bnd\_X & GT:CNADJ & 0:1 & 1:1 \\
-13 & 421681 & bnd\_U & A & A$]2:321681]$ & 6 & PASS & MATEID=bnd\_W & GT:CNADJ & 0:1 & 1:1 \\
-13 & 421682 & bnd\_X & C & $[2:321682[$C & 6 & PASS & MATEID=bnd\_V & GT:CNADJ & 0:1 & 1:1 \\
+2 & 321681 & bnd\_W & G & G$]2:421681]$ & 6 & PASS & MATEID=bnd\_U & GT:CN & 0:1 & 1:1 \\
+2 & 321682 & bnd\_V & T & $[2:421682[$T & 6 & PASS & MATEID=bnd\_X & GT:CN & 0:1 & 1:1 \\
+13 & 421681 & bnd\_U & A & A$]2:321681]$ & 6 & PASS & MATEID=bnd\_W & GT:CN & 0:1 & 1:1 \\
+13 & 421682 & bnd\_X & C & $[2:321682[$C & 6 & PASS & MATEID=bnd\_V & GT:CN & 0:1 & 1:1 \\
 \end{tabular}
 \end{flushleft}
 \normalsize