Updates to Workflows

sanger-tol · Jul 10, 2024 · 37c8847 · 37c8847
1 parent f32be17
commit 37c8847
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -80,9 +80,9 @@ jobs:
         run: |
           curl https://dp24.cog.sanger.ac.uk/blastn.tar.gz | tar xzf -
 
-      - name: Temporary ASCC Diamond Data
+      - name: Temporary Accession2TaxID Data
         run: |
-          curl https://dp24.cog.sanger.ac.uk/ascc/accession2taxid.tar.gz | tar -C accession2taxid -xzf -
+          curl https://dp24.cog.sanger.ac.uk/ascc/accession2taxid.tar.gz | tar -xzf -
 
       - name: Download the NCBI taxdump database
         run: |

diff --git a/assets/github_testing/test.yaml b/assets/github_testing/test.yaml
@@ -15,7 +15,7 @@ dimensionality_reduction_methods: "pca,random_trees"
 nt_database: /home/runner/work/ascc/ascc/blastdb/
 nt_database_prefix: tiny_plasmodium_blastdb.fa
 nt_kraken_db_path: /home/runner/work/ascc/ascc/kraken2/kraken2
-ncbi_accessionids_folder: /home/runner/work/ascc/ascc/accession2taxid/
+ncbi_accessionids_folder: /home/runner/work/ascc/ascc/20240709_tiny_accession2taxid/
 ncbi_taxonomy_path: /home/runner/work/ascc/ascc/ncbi_taxdump/
 ncbi_rankedlineage_path: /home/runner/work/ascc/ascc/ncbi_taxdump/rankedlineage.dmp
 busco_lineages_folder: /home/runner/work/ascc/ascc/busco_database/lineages