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@muffato muffato released this 12 Feb 09:13
· 119 commits to main since this release
0.3.0
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[0.3.0] – Poliwag – [2024-02-09]

The pipeline has now been validated on five genomes, all under 100 Mbp: a sponge, a platyhelminth, and three fungi.

Enhancements & fixes

  • Fixed the conditional runs of blastn
  • Fixed the generation of the no-hit list
  • Fixed the conversion of the unaligned input files to Fasta
  • Fixed the documentation about preparing the NT database
  • Fixed the detection of the NT database in the nf-core module
  • The pipeline now supports samplesheets generated by the nf-core/fetchngs pipeline by passing the --fetchngs_samplesheet true option.
  • FastQ files can bypass the conversion to Fasta
  • Fixed missing BUSCO results from the blobdir (only 1 BUSCO was loaded)
  • Fixed the default category used to colour the blob plots
  • Fixed the output directory of the images
  • Added an option to select the format of the images (PNG or SVG)

Parameters

Old parameter New parameter
--fetchngs_samplesheet
--image_format

NB: Parameter has been updated if both old and new parameter information is present.
NB: Parameter has been added if just the new parameter information is present.
NB: Parameter has been removed if new parameter information isn't present.

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