Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

adding a new plate purpose for multiplexed sequencing submissions, to avoid FC #2120

Merged
merged 13 commits into from
Feb 3, 2025
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion app/models/labware_creators/pooled_tubes_by_submission.rb
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ def all_wells_in_pool_passed?(pool_info)
end

def pick?(location)
well_locations.fetch(location).passed?
!(well_locations.fetch(location).failed? || well_locations.fetch(location).empty?)
Copy link
Contributor

@KatyTaylor KatyTaylor Jan 13, 2025

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Needed because when the multiplexing pipeline starts with a stock plate (rather than a cherrypick plate, or one coming from a library prep pipeline), the wells are of state 'unknown'

end
end
end
8 changes: 8 additions & 0 deletions config/pipelines/multiplexing.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
Multiplexing:
pipeline_group: Multiplexing
filters:
request_type_key:
- limber_multiplexing
relationships:
Library Stock Plate: LB Lib Pool #These are supplied as ready-made libraries and enter the pipeline at this point.
LB Lib Pool: LB Lib Pool Norm
8 changes: 8 additions & 0 deletions config/purposes/library_stock_plate.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
# A plate provided as ready-made libraries.
# These used to be imported as Stock Plates and then 'fake cherrypicked' onto 'LB Lib PCR XP', which were allowed down the multiplexing pipelines.
# Now, they can be imported and submitted as this more accurate plate purpose.
Library Stock Plate:
:asset_type: plate
:stock_plate: true
:input_plate: true
:presenter_class: Presenters::StockPlatePresenter
Loading