Refactor request types and submission templates

This commit refactors the request types and submission templates to remove redundant Hi-C options and add a new Hi-C sequencing option for Limber-Bespoke PCR. The changes ensure that the request types and submission templates are up to date and accurately reflect the available options for sequencing.
sanger · Oct 23, 2024 · 683ff1a · 683ff1a
1 parent 6bb4976
commit 683ff1a
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Showing 2 changed files with 25 additions and 6 deletions.
diff --git a/config/default_records/request_types/005_limber_bespoke.yml b/config/default_records/request_types/005_limber_bespoke.yml
@@ -27,12 +27,6 @@ limber_pcr_bespoke:
     - Manual Chromium single cell TCR HT
     - emSEQ
     - Haplotagging
-    - Hi-C
-    - Hi-C - Arima v1
-    - Hi-C - Arima v2
-    - Hi-C - Dovetail
-    - Hi-C - OmniC
-    - Hi-C - Qiagen
     - Manual Standard WGS (Plate)
     - Ribozero RNA depletion
     - Ribozero RNA-seq (Bacterial)
@@ -44,6 +38,24 @@ limber_pcr_bespoke:
     - TraDIS
     - TruSeq mRNA (RNA Seq)
     - SGE Library v0.2
+limber_pcr_hic_bespoke:
+  <<: &limber_bespoke_library
+    asset_type: Well
+    order: 1
+    request_class_name: IlluminaHtp::Requests::StdLibraryRequest
+    billable: true
+    product_line_name: Bespoke
+  name: Limber PCR Bespoke
+  acceptable_purposes:
+    - LBB Cherrypick
+    - LBC Cherrypick
+  library_types:
+    - Hi-C
+    - Hi-C - Arima v1
+    - Hi-C - Arima v2
+    - Hi-C - Dovetail
+    - Hi-C - OmniC
+    - Hi-C - Qiagen
 limber_chromium_bespoke:
   <<: *limber_bespoke_library
   name: Limber Chromium Bespoke

diff --git a/config/default_records/submission_templates/007_novaseqx_sequencing.yml b/config/default_records/submission_templates/007_novaseqx_sequencing.yml
@@ -118,6 +118,13 @@ Limber-Bespoke - PCR - NovaSeqX paired end sequencing:
     product_line_name: Bespoke
     product_catalogue_name: GenericPCR
     request_type_keys: ["limber_pcr_bespoke", "limber_multiplexing", "illumina_htp_novaseqx_paired_end_sequencing"]
+Limber-Bespoke - PCR - HiC sequencing:
+  name: "Limber-Bespoke - PCR - HiC sequencing"
+  submission_class_name: "LinearSubmission"
+  related_records:
+    product_line_name: Bespoke
+    product_catalogue_name: GenericPCR
+    request_type_keys: ["limber_pcr_hic_bespoke"]
 Limber-Bespoke - PCR Free - NovaSeqX paired end sequencing:
   name: "Limber-Bespoke - PCR Free - NovaSeqX paired end sequencing"
   submission_class_name: "LinearSubmission"