Regenerate artifacts from biolink-model.yaml #1
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| name: Regenerate Biolink Model Artifacts | |
| # Controls when the action will run. Triggers the workflow on push | |
| # event but only for the master branch, and specifically on the biolink-model.yaml | |
| on: | |
| push: | |
| branches: | |
| - master | |
| repository_dispatch: | |
| types: trigger-build-artifacts | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Setup Python Environment | |
| uses: actions/setup-python@v2 | |
| with: | |
| # Version range or exact version of a Python version to use, using SemVer's version range syntax. | |
| python-version: 3.9 | |
| - name: Setup build environment | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y build-essential git wget curl | |
| sudo apt-get install -y openjdk-8-jre | |
| sudo apt-get install -y graphviz | |
| wget https://github.com/joelittlejohn/jsonschema2pojo/releases/download/jsonschema2pojo-1.0.2/jsonschema2pojo-1.0.2.tar.gz | |
| tar -xvzf jsonschema2pojo-1.0.2.tar.gz | |
| pip install poetry | |
| - name: Generate Biolink Model artifacts | |
| run: | | |
| export PATH=$PATH:`pwd`/jsonschema2pojo-1.0.2/bin | |
| make -B install build | |
| if [ $? -eq 0 ]; then | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add biolink-model.* | |
| git add biolink-modeln.* | |
| git add context* | |
| git add biolink/model.py | |
| git add biolink/pydanticmodel.py | |
| git add java/BiolinkModel.java | |
| git add graphviz/* | |
| git add golr-views/* | |
| git add pydantic/* | |
| git add json-schema/biolink-model.json | |
| git add prefix-map/biolink-model-prefix-map.json | |
| git commit -m "Regenerate artifacts from biolink-model.yaml" | |
| git push | |
| else | |
| echo "'make' failed to finish successfully" | |
| fi | |
| - name: Build documentation | |
| run: | | |
| poetry install | |
| poetry run python scripts/jekyllmarkdowngen.py --yaml biolink-model.yaml --dir docs | |
| cp biolink-model.yaml docs | |
| cp predicate_mapping.yaml docs | |
| - name: Deploy to gh-pages branch | |
| uses: JamesIves/github-pages-deploy-action@releases/v3 | |
| with: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| REPOSITORY_NAME: biolink/biolink-model # The repository the action should deploy to | |
| BRANCH: gh-pages # The branch the action should deploy to. | |
| COMMIT_MESSAGE: 'Update documentation' | |
| FOLDER: . # The folder the action should deploy. |