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# Name of the GitHub Action | ||
name: Build scipion-chem on Pull Request | ||
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# Specify when the Action should be triggered: when a pull request is opened against the 'devel' or 'master' branch | ||
on: | ||
pull_request: | ||
branches: [devel, master] | ||
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# Define the job that should be run | ||
jobs: | ||
build: | ||
# Specify the machine to run the job on | ||
runs-on: ubuntu-latest | ||
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# Define the steps to be taken in the job | ||
steps: | ||
# Getting current test time | ||
- name: Get current time | ||
uses: josStorer/get-current-time@v2 | ||
id: current-time | ||
with: | ||
format: YYYYMMDD-HH | ||
utcOffset: "+02:00" | ||
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# Using current time to view test time (for debugging purposes) | ||
- name: Use current time | ||
env: | ||
R_TIME: "${{ steps.current-time.outputs.readableTime }}" | ||
run: echo $R_TIME | ||
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# Installing wget, needed for downloading some dependencies | ||
- name: Install wget | ||
run: | | ||
# Update package lists and install wget | ||
sudo apt-get update && \ | ||
sudo apt-get install -y wget | ||
# Installing Miniconda | ||
- name: Install Miniconda | ||
working-directory: ${{ github.workspace }}/../ | ||
run: | | ||
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \ | ||
bash Miniconda3-latest-Linux-x86_64.sh -b -p ${{ github.workspace }}/../miniconda/ && \ | ||
source ./miniconda/etc/profile.d/conda.sh | ||
# Installing Scipion | ||
- name: Install Scipion with dependencies | ||
working-directory: ${{ github.workspace }}/../ | ||
run: | | ||
sudo apt-get install -y gcc-10 g++-10 libopenmpi-dev make && \ | ||
eval "$(${{ github.workspace }}/../miniconda/bin/conda shell.bash hook)" && \ | ||
pip3 install --user scipion-installer && \ | ||
python3 -m scipioninstaller -conda -noXmipp -noAsk ${{ github.workspace }}/../scipion | ||
# Install scipion-chem | ||
- name: Install scipion-chem | ||
working-directory: ${{ github.workspace }}/../ | ||
run: | | ||
git clone https://github.com/scipion-chem/scipion-chem.git && \ | ||
scipion/scipion3 installp -p scipion-chem --devel | ||
# Check out the repository in the pull request | ||
- name: Checkout repository | ||
uses: actions/checkout@v2 | ||
with: | ||
ref: ${{ github.head_ref }} | ||
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# Install plugin from the pull request using the Scipion3 installp command | ||
- name: Install plugin from pull request | ||
working-directory: ${{ github.workspace }} | ||
run: | | ||
# Install the repository from the pull request | ||
../scipion/scipion3 installp -p . --devel |