[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

anndata/_core/file_backing.py

@@ -47,9 +47,7 @@ def __iter__(self) -> Iterator[str]:
     def __getitem__(self, key: str) -> h5py.Group | h5py.Dataset | SparseDataset:
         return self._file[key]
 
-    def __setitem__(
-        self, key: str, value: h5py.Group | h5py.Dataset | SparseDataset
-    ):
+    def __setitem__(self, key: str, value: h5py.Group | h5py.Dataset | SparseDataset):
         self._file[key] = value
 
     def __delitem__(self, key: str):

anndata/_core/index.py

@@ -38,7 +38,13 @@ def _normalize_indices(
 
 
 def _normalize_index(
-    indexer: slice | np.integer | int | str | Sequence[int | np.integer] | np.ndarray | pd.Index,
+    indexer: slice
+    | np.integer
+    | int
+    | str
+    | Sequence[int | np.integer]
+    | np.ndarray
+    | pd.Index,
     index: pd.Index,
 ) -> slice | int | np.ndarray:  # ndarray of int
     if not isinstance(index, pd.RangeIndex):

anndata/_core/merge.py

@@ -439,7 +439,7 @@ def merge_only(ds: Collection[Mapping]) -> Mapping:
 
 
 def resolve_merge_strategy(
-    strategy: str | Callable | None
+    strategy: str | Callable | None,
 ) -> Callable[[Collection[Mapping]], Mapping]:
     if not isinstance(strategy, Callable):
         strategy = MERGE_STRATEGIES[strategy]

anndata/_io/read.py

@@ -57,9 +57,7 @@ def read_csv(
     return read_text(filename, delimiter, first_column_names, dtype)
 
 
-def read_excel(
-    filename: PathLike, sheet: str | int, dtype: str = "float32"
-) -> AnnData:
+def read_excel(filename: PathLike, sheet: str | int, dtype: str = "float32") -> AnnData:
     """\
     Read `.xlsx` (Excel) file.
 

anndata/_io/specs/registry.py

@@ -214,9 +214,7 @@ def get_spec(
 
 
 class Reader:
-    def __init__(
-        self, registry: IORegistry, callback: Callable | None = None
-    ) -> None:
+    def __init__(self, registry: IORegistry, callback: Callable | None = None) -> None:
         self.registry = registry
         self.callback = callback
 
@@ -244,14 +242,15 @@ def __init__(
         self,
         registry: IORegistry,
         callback: Callable[
-                [
-                    GroupStorageType,
-                    str,
-                    StorageType,
-                    dict,
-                ],
-                None,
-            ] | None = None,
+            [
+                GroupStorageType,
+                str,
+                StorageType,
+                dict,
+            ],
+            None,
+        ]
+        | None = None,
     ):
         self.registry = registry
         self.callback = callback

anndata/experimental/merge.py

@@ -402,7 +402,9 @@ def concat_on_disk(
     axis: Literal[0, 1] = 0,
     join: Literal["inner", "outer"] = "inner",
     merge: StrategiesLiteral | Callable[[Collection[Mapping]], Mapping] | None = None,
-    uns_merge: StrategiesLiteral | Callable[[Collection[Mapping]], Mapping] | None = None,
+    uns_merge: StrategiesLiteral
+    | Callable[[Collection[Mapping]], Mapping]
+    | None = None,
     label: str | None = None,
     keys: Collection[str] | None = None,
     index_unique: str | None = None,

anndata/tests/test_transpose.py

@@ -59,9 +59,7 @@ def test_transposed_contents(adata):
     else:
         assert adata.X is t.X is None
 
-    assert_equal(
-        {k: v.T for k, v in adata.layers.items()}, dict(t.layers.items())
-    )
+    assert_equal({k: v.T for k, v in adata.layers.items()}, dict(t.layers.items()))
     assert_equal(adata.obs, t.var)
     assert_equal(adata.var, t.obs)
     assert_equal(dict(adata.obsm), dict(t.varm))