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Add H5AD read/write helpers #88
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Commits on Jul 6, 2023
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Move test dummy helper to main function
Makes it possible to use for examples. Also add SingleCellExperiment and Seurat dummy functions.
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Refactor dummy datasets into a single function
Needs to be exported for examples
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Commits on Jul 21, 2023
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Commits on Aug 31, 2023
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* Remove temporary workaround * use `inherits()` instead of `is()` * Add HDF5AnnData and InMemoryAnnData to `read_h5ad()` * fix incorrect merge * try to fix error in R devel * fix docs * add terminal newline * remove conditions * undo previous commit
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Commits on Sep 1, 2023
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* support rhdf5 nullable vector and boolean enum implementation - use `as.vector()` to reduce code duplication when reading nullable vectors - closes #82 * implement and use read_h5ad_attributes - 'quietly' to suppress warnings; set to TRUE when relevant warnings are handled by calling code * use 'anndataR-category-unknown' as a class of warning - versions of rhdf5 that don't support ENUM; more user-friendly message - use to suppress irrelevant warnings in unit tests * Tidy after merge and style * More tidying... * Roxygenise * Fix namespace --------- Co-authored-by: Martin Morgan <[email protected]> Co-authored-by: Luke Zappia <[email protected]>
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