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Intron7 authored Jun 10, 2022
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Expand Up @@ -8,15 +8,15 @@ The functions are analogous versions of functions that can be found within [scan

To run the code in this repository you need a conda environment with rapids and scanpy installed. To use the full functionality of this repo please use `rapids-22.04`. You also need an Nvidia GPU.
```
conda create -n rapids_singelcell -f conda/rapids_singecell.yml
conda env create -n rapids_singelcell -f conda/rapids_singecell.yml
ipython kernel install --user --name=rapids_singelcell
```
After you set up the enviroment you can install this package from this wheel into the enviroment. The wheel doesn't install any dependencies
```
pip install https://github.com/Intron7/rapids_singlecell/releases/download/v0.1.0/rapids_singlecell-0.1.0-py3-none-any.whl
```

With this enviroment, you should be able to run the notebooks. So far I have only tested these Notebooks on a Quadro RTX 6000 and an RTX 3090.
With this enviroment, you should be able to run the notebooks. So far I have only tested these Notebooks on a Quadro RTX 6000, A100 80GB and an RTX 3090.

## Citation

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