v0.6.2

v0.6.2

New Function

• added .gr.ligrec from squidpy

Updates

• removed pp.calc_gene_qc
• switched pp.calculate_qc_metrics to cp.RawKernel. Includes functionality from pp.calc_gene_qc
• switched pp.highly_variable_genes with flavor='pearson_residuals' to cp.RawKernel
• switched pp.normalize_pearson_residuals to cp.RawKernel
• added checks cundata.X and cunndata.layers for .nnz < 2**31-1 because of Cupy's indptr being locked to 32bit ints.

Other

• added .pre-commit-config.yaml
• added coding-style black