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Pull requests: scverse/scanpy

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Pull requests list

Catch PerfectSeparationWarning during regress_out
#3275 opened Oct 8, 2024 by jeskowagner Loading…
2 tasks done
1
1
[pre-commit.ci] pre-commit autoupdate
#3274 opened Oct 7, 2024 by pre-commit-ci bot Loading…
1
Use upstream sklearn PCA if possible
#3267 opened Sep 27, 2024 by flying-sheep Loading… 1.11.0
6
Implement sparse PCA using dask
#3263 opened Sep 26, 2024 by flying-sheep Loading…
2 of 3 tasks
1.11.0
1
32
Add sanitize to score_genes
#3262 opened Sep 26, 2024 by flying-sheep • Draft
3 tasks
1
fix bug for partial_fit when the number of batch samples is less than n_comp
#3227 opened Sep 12, 2024 by DingWB Loading…
1 of 3 tasks
2
Less hacky plotting classes
#3209 opened Aug 13, 2024 by flying-sheep • Draft
9
Switch dendrogram implementation to aggregate
#3204 opened Aug 9, 2024 by flying-sheep • Draft
2 of 3 tasks
1
1
Bug fix for scanpy.tl.score_genes
#3167 opened Jul 25, 2024 by gmvaccaro Loading…
2 of 3 tasks
1.10.4
2
8
add layer argument for sc.tl.score_genes_cell_cycle
#3138 opened Jul 2, 2024 by shinthor • Draft
1 of 3 tasks
1.11.0
2
Speedup (~20x) of scanpy.pp.regress_out function using Linear Least Square method. benchmark
#3110 opened Jun 18, 2024 by ashish615 Loading…
3 tasks
@Intron7
24
scale function(_get_mean_var) updated for dense array, speedup upto ~4.65x benchmark
#3099 opened Jun 5, 2024 by ashish615 Loading… 1.10.4
@Intron7
26
Add str as a valid option for the save argument in scanpy.pl.rank_genes_groups
#3076 opened May 22, 2024 by JoshLoecker Loading…
1
Update ingest example. Fixes AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
#3075 opened May 22, 2024 by siebrenf Loading…
3 tasks done
1
2
t-SNE optimization using scikit-learn-intelex
#3061 opened May 14, 2024 by ashish615 Loading…
14
✨ Add colorblocks to baseplot similar to heatmap Area - Plotting 🌺
#3043 opened May 2, 2024 by mbuttner Loading…
2 tasks done
1
Start overhaul for embedding sort order Area - Plotting 🌺 Enhancement ✨
#2998 opened Apr 10, 2024 by ivirshup • Draft
20 tasks
1.11.0
1
1
parquet support for visium HD
#2992 opened Apr 9, 2024 by ktpolanski Loading…
1 of 3 tasks
1
5
Pearson Residuals: normalization and hvg
#2980 opened Apr 5, 2024 by eroell • Draft
2 of 3 tasks
1
13
(chore): run azure on multiple vm images
#2976 opened Apr 3, 2024 by ilan-gold • Draft
3 tasks
4
DensMAP support 2
#2946 opened Mar 22, 2024 by keller-mark Loading…
4 tasks done
1
1
Stacked barplot
#2873 opened Feb 20, 2024 by mbernste Loading…
1
tSNE components parameter
#2803 opened Jan 11, 2024 by ch1ru Loading…
2 of 3 tasks
1
1
Faster filtering on sparse matrices
#2772 opened Nov 30, 2023 by gjhuizing Loading…
3 tasks
5
Generalize tl.dendrogram function to either axis
#2771 opened Nov 28, 2023 by dburkhardt Loading…
2 of 3 tasks
1.11.0
1
@flying-sheep
14
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