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Numba version of mutational load#573

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grst wants to merge 25 commits intomainscverse/scirpy:mainfrom mutload-numbascverse/scirpy:mutload-numbaCopy head branch name to clipboard

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Commits on Aug 9, 2024

• Added mutational_load function to calculate differences between sequence and germline alignment

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Commits on Aug 13, 2024

• Merge branch 'scverse:main' into mutational_load

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Commits on Aug 15, 2024

• Rewrote mutational_load function based on previous feedback and added function to api.rst

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• Fixed an issue with pre-commit

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• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

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Commits on Aug 18, 2024

• Further optimized mutational_load function and formating of docstring documentation

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Commits on Aug 20, 2024

• Fixed small issues with the code layout as suggested by grst

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Commits on Aug 26, 2024

• Merge branch 'scverse:main' into mutational_load

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• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

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Commits on Aug 29, 2024

• Added a first beta-test case, which revealed some bugs that were also fixed

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• Specified 'except' condition

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• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

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Commits on Aug 30, 2024

• Merge branch 'main' into mutational_load

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Commits on Oct 15, 2024

• Merge branch 'main' into mutational_load

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Commits on Oct 17, 2024

• Add notebook section about somatic hypermutation

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Commits on Nov 20, 2024

• Merge branch 'main' into mutational_load

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• Update SHM description text in tutorial

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Commits on Nov 24, 2024

• Merge branch 'main' into mutational_load

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• prototype for numba / per chain version of mutational load function

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