comment out unlink (file DNE on gh) #1712
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| name: Testing | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| setup-build: | |
| name: Ex1 (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: [3.8, 3.9, "3.10", "3.11"] | |
| # python-version: ["3.10", ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| activate-environment: aurora-test | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Env | |
| run: | | |
| python --version | |
| conda install -c conda-forge pytest pytest-cov certifi">=2017.4.17" pandoc | |
| pip install -r requirements-dev.txt | |
| pip install git+https://github.com/kujaku11/mt_metadata.git@main | |
| pip install git+https://github.com/kujaku11/mth5.git@master | |
| pip install git+https://github.com/MTgeophysics/mtpy-v2.git@main | |
| pip uninstall aurora -y | |
| - name: Install Our Package | |
| run: | | |
| pip install -e . | |
| conda list | |
| pip freeze | |
| - name: Install Jupyter and dependencies | |
| run: | | |
| pip install jupyter | |
| pip install ipykernel | |
| python -m ipykernel install --user --name aurora-test | |
| # Install any other dependencies you need | |
| - name: Execute Jupyter Notebooks | |
| run: | | |
| jupyter nbconvert --to notebook --execute docs/examples/dataset_definition.ipynb | |
| jupyter nbconvert --to notebook --execute docs/examples/operate_aurora.ipynb | |
| jupyter nbconvert --to notebook --execute docs/tutorials/pkd_units_check.ipynb | |
| jupyter nbconvert --to notebook --execute docs/tutorials/pole_zero_fitting/lemi_pole_zero_fitting_example.ipynb | |
| jupyter nbconvert --to notebook --execute docs/tutorials/processing_configuration.ipynb | |
| jupyter nbconvert --to notebook --execute docs/tutorials/process_cas04_multiple_station.ipynb | |
| jupyter nbconvert --to notebook --execute docs/tutorials/synthetic_data_processing.ipynb | |
| jupyter nbconvert --to notebook --execute tests/test_run_on_commit.ipynb | |
| # Replace "notebook.ipynb" with your notebook's filename | |
| # - name: Commit changes (if any) | |
| # run: | | |
| # git config --local user.email "[email protected]" | |
| # git config --local user.name "GitHub Action" | |
| # git commit -a -m "Execute Jupyter notebook" | |
| # git push | |
| # if: ${{ success() }} | |
| - name: Run Tests | |
| run: | | |
| # pytest -s -v tests/synthetic/test_fourier_coefficients.py | |
| # pytest -s -v tests/test_general_helper_functions.py | |
| pytest -s -v --cov=./ --cov-report=xml --cov=aurora | |
| - name: "Upload coverage reports to Codecov" | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |
| flags: tests | |
| # token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Build Doc | |
| if: ${{ (github.ref == 'refs/heads/main') && (matrix.python-version == '3.8')}} | |
| run: | | |
| cd docs | |
| make html | |
| cd .. | |
| - name: GitHub Pages | |
| if: ${{ (github.ref == 'refs/heads/main') && (matrix.python-version == '3.8')}} | |
| uses: crazy-max/[email protected] | |
| with: | |
| build_dir: docs/_build/html | |
| # Write the given domain name to the CNAME file | |
| # fqdn: aurora.simpeg.xyz | |
| # Allow Jekyll to build your site | |
| jekyll: false # optional, default is true | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |