TileDB-SOMA Python CI (remote storage) #45
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| name: TileDB-SOMA Python CI (remote storage) | ||
| on: | ||
| # Not for regular use, but you can uncomment this when putting up PRs on this | ||
| # file. Just remember to take it back out. There's no need to run | ||
| # remote-storage tests on every single PR push to our repo. | ||
| # | ||
| # pull_request: | ||
| # | ||
| # Allows for 'as needed' manual trigger: | ||
| workflow_dispatch: | ||
| # | ||
| # Use a regular nighly build as well (time is UTC): | ||
| schedule: | ||
| - cron: "25 5 * * *" | ||
| env: | ||
| # Don't name this "TILEDB_REST_TOKEN" since that will map into a core | ||
| # env/config override, as if config key "rest.token" had been set. One of the | ||
| # purposes of this CI is to run tests where all config is passed via context | ||
| # arguments and none via environment variables, in order to flush out | ||
| # callsites within the code which aren't passing context as they should. | ||
| TILEDB_REST_UNITTEST_TOKEN: ${{ secrets.TILEDB_REST_UNITTEST_TOKEN}} | ||
| jobs: | ||
| ci: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| # This could be run on MacOS too, but, we have enough OS redundancy, | ||
| # and MacOS-runner availability is a more tightly constrained resource | ||
| # in GitHub Actions as of 2025-02-06. | ||
| - name: linux | ||
| os: ubuntu-24.04 | ||
| # TO DO: also on 3.12. But 3.9 is higher-pri, until we drop support | ||
| # for it. (Note our main CI run tests across a broader set of Python | ||
| # versions.) | ||
| python_version: 3.9 | ||
| cc: gcc-13 | ||
| cxx: g++-13 | ||
| runs-on: ${{ matrix.os }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Show matrix OS | ||
| run: echo "matrix.os:" ${{ matrix.os }} | ||
| - name: Linux CPU info | ||
| if: ${{ matrix.os == 'ubuntu-24.04' }} | ||
| run: cat /proc/cpuinfo | ||
| - name: MacOS CPU info | ||
| if: ${{ matrix.os == 'macOS-latest' }} | ||
| run: sysctl -a | grep cpu | ||
| - name: Select XCode version | ||
| if: startsWith(matrix.os, 'macos') | ||
| uses: maxim-lobanov/setup-xcode@v1 | ||
| with: | ||
| xcode-version: '15.4' | ||
| - name: Set up Python ${{ matrix.python_version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python_version }} | ||
| cache: pip | ||
| cache-dependency-path: ./apis/python/setup.py | ||
| - name: Show XCode version | ||
| run: clang --version | ||
| - name: Check out TileDB-SOMA | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 # ensure we get all tags to inform package version determination | ||
| - name: Log pip dependencies | ||
| run: pip list | ||
| - name: Install tiledbsoma | ||
| # If you'reiterating on the testing framework itself, install from PyPI to avoid the | ||
| # time-consuming build. If you're trying to evaluate the code modified by a PR, | ||
| # install from source. | ||
| # | ||
| # From PyPI: | ||
| # run: pip install tiledbsoma==1.15.7 | ||
| # | ||
| # From source: | ||
| run: pip -v install -e apis/python[all] -C "--build-option=--no-tiledb-deprecated" | ||
| # | ||
| env: | ||
| CC: ${{ matrix.cc }} | ||
| CXX: ${{ matrix.cxx }} | ||
| - name: Install dependencies | ||
| run: pip install --prefer-binary pytest typeguard tiledb.cloud | ||
| - name: Show package versions | ||
| run: python scripts/show-versions.py | ||
| - name: Show tiledb.cloud version | ||
| run: python -c 'import tiledb.cloud; print(tiledb.cloud.version.version)' | ||
| - name: Run pytests for Python | ||
| shell: bash | ||
| run: python -m pytest apis/python/remote_tests -v --durations=20 --maxfail=50 | ||
| # File a bug report if anything fails, but don't file tickets for manual runs | ||
| # -- only for scheduled ones. | ||
| create_issue_on_fail: | ||
| needs: [ci] | ||
|
Check failure on line 114 in .github/workflows/python-remote-storage.yml
|
||
| if: (failure() || cancelled()) && github.event_name != 'workflow_dispatch' | ||
| steps: | ||
| - name: Checkout TileDB-SOMA `main` | ||
| uses: actions/checkout@v2 | ||
| - name: Create Issue if Build Fails | ||
| uses: JasonEtco/create-an-issue@v2 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| with: | ||
| filename: .github/workflows/daily-remote-tests-issue-template.md | ||
