fix convert.py

singleron-RD · Apr 30, 2024 · b948d00 · b948d00
1 parent 587bd47
commit b948d00
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/convert.py b/bin/convert.py
@@ -180,7 +180,7 @@ def write_cmd(self, ext_args, fq1, fq2, prime):
                 if bc_p5 in bc_p5_mismatch_dict:
                     prime = 'p5'
                     bc = bc_p5_p3_dict[bc_p5_mismatch_dict[bc_p5]]
-                    umi = utils.get_seq_str(seq2, pattern_dict_p5["U"]) + extra_bp
+                    umi = utils.get_seq_str(seq1, pattern_dict_p5["U"]) + extra_bp
                     bc_qual = utils.get_seq_str(qual1, pattern_dict_p5["C"]) + 'F' * bc_extra_len
                     umi_qual = utils.get_seq_str(qual1, pattern_dict_p5["U"]) + 'F' * extra_len
             if prime in ['p3','p5']: