nf-celescope

A collection of nextflow pipelines to process sequencing data generated by Singleron kits.

Note

We are rewriting CeleScope pipelines using nextflow to achieve better scalability and reproducibility. We recommend using nf-celescope whenever possible.

Available pipelines

Pipeline	Kit	Description of data
scrna	GEXSCOPE® Single Cell RNA Library Kit, GEXSCOPE® Single Nuclei RNA Library Kit	single-cell/single-nucleus RNA-seq
wf-single-cell	GEXSCOPE® Single Cell RNA Library Kit + Nanopore	single-cell RNA-seq with Nanopore sequencing
scsnp	FocuSCOPE® Single Cell Targeted Capture Kit	single-cell targeted RNA amplicon
scatac		single-cell ATAC-seq
sccite		single-cell CITE-seq