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Workflow for detecting genome-wide horizontal gene transfers

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WGS-HGT

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Workflow for detecting genome-wide horizontal gene transfers.

This package contains code for the Distance-Method HGT detection algorithm, a benchmark for running phylogenetic, homology search and parametric software for HGT detection and the final workflow consisting of a subset of the benchmarked tools and intermediate steps for genome-wide HGT detection.

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Workflow for detecting genome-wide horizontal gene transfers

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  • Python 78.6%
  • Shell 13.6%
  • Perl 7.8%