Merge branch 'CoLM-SYSU:master' into master

.github/workflows/TestCaseLists

@@ -0,0 +1,88 @@
+GRID_PFT_URBANON_CAMBELL_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANON  Campbell CaMaON  BGCON   CROPON
+GRID_PFT_URBANON_CAMBELL_CAMAOFF_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANON  Campbell CaMaOFF BGCON   CROPON
+GRID_PFT_URBANON_vanGen_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaON  BGCON   CROPON
+GRID_PFT_URBANON_vanGen_CAMAOFF_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaOFF BGCON   CROPON
+GRID_PFT_URBANOFF_CAMBELL_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANOFF Campbell CaMaON  BGCON   CROPON
+GRID_PFT_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANOFF Campbell CaMaOFF BGCON   CROPON
+GRID_PFT_URBANOFF_vanGen_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaON  BGCON   CROPON
+GRID_PFT_URBANOFF_vanGen_CAMAOFF_BGCON_CROPON     GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaOFF BGCON   CROPON
+GRID_PFT_URBANON_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANON  Campbell CaMaON  BGCON   CROPOFF
+GRID_PFT_URBANON_CAMBELL_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANON  Campbell CaMaOFF BGCON   CROPOFF
+GRID_PFT_URBANON_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaON  BGCON   CROPOFF
+GRID_PFT_URBANON_vanGen_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_PFT_URBANOFF_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANOFF Campbell CaMaON  BGCON   CROPOFF
+GRID_PFT_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANOFF Campbell CaMaOFF BGCON   CROPOFF
+GRID_PFT_URBANOFF_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaON  BGCON   CROPOFF
+GRID_PFT_URBANOFF_vanGen_CAMAOFF_BGCON_CROPOFF    GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_PFT_URBANON_CAMBELL_CAMAON_BGCOFF_CROPOFF    GRID LULC_IGBP_PFT URBANON  Campbell CaMaON  BGCOFF  CROPOFF
+GRID_PFT_URBANON_CAMBELL_CAMAOFF_BGCOFF_CROPOFF   GRID LULC_IGBP_PFT URBANON  Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_PFT_URBANON_vanGen_CAMAON_BGCOFF_CROPOFF     GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_PFT_URBANON_vanGen_CAMAOFF_BGCOFF_CROPOFF    GRID LULC_IGBP_PFT URBANON  vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_PFT_URBANOFF_CAMBELL_CAMAON_BGCOFF_CROPOFF   GRID LULC_IGBP_PFT URBANOFF Campbell CaMaON  BGCOFF  CROPOFF
+GRID_PFT_URBANOFF_CAMBELL_CAMAOFF_BGCOFF_CROPOFF  GRID LULC_IGBP_PFT URBANOFF Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_PFT_URBANOFF_vanGen_CAMAON_BGCOFF_CROPOFF    GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_PFT_URBANOFF_vanGen_CAMAOFF_BGCOFF_CROPOFF   GRID LULC_IGBP_PFT URBANOFF vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_PC_URBANON_CAMBELL_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANON  Campbell CaMaON  BGCON   CROPON
+GRID_PC_URBANON_CAMBELL_CAMAOFF_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANON  Campbell CaMaOFF BGCON   CROPON
+GRID_PC_URBANON_vanGen_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaON  BGCON   CROPON
+GRID_PC_URBANON_vanGen_CAMAOFF_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaOFF BGCON   CROPON
+GRID_PC_URBANOFF_CAMBELL_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANOFF Campbell CaMaON  BGCON   CROPON
+GRID_PC_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPON    GRID LULC_IGBP_PC  URBANOFF Campbell CaMaOFF BGCON   CROPON
+GRID_PC_URBANOFF_vanGen_CAMAON_BGCON_CROPON	  GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaON  BGCON   CROPON
+GRID_PC_URBANOFF_vanGen_CAMAOFF_BGCON_CROPON     GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaOFF BGCON   CROPON
+GRID_PC_URBANON_CAMBELL_CAMAON_BGCOFF_CROPON     GRID LULC_IGBP_PC  URBANON  Campbell CaMaON  BGCOFF  CROPON
+GRID_PC_URBANON_CAMBELL_CAMAOFF_BGCOFF_CROPON    GRID LULC_IGBP_PC  URBANON  Campbell CaMaOFF BGCOFF  CROPON
+GRID_PC_URBANON_vanGen_CAMAON_BGCOFF_CROPON      GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaON  BGCOFF  CROPON
+GRID_PC_URBANON_vanGen_CAMAOFF_BGCOFF_CROPON     GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaOFF BGCOFF  CROPON
+GRID_PC_URBANOFF_CAMBELL_CAMAON_BGCOFF_CROPON    GRID LULC_IGBP_PC  URBANOFF Campbell CaMaON  BGCOFF  CROPON
+GRID_PC_URBANOFF_CAMBELL_CAMAOFF_BGCOFF_CROPON   GRID LULC_IGBP_PC  URBANOFF Campbell CaMaOFF BGCOFF  CROPON
+GRID_PC_URBANOFF_vanGen_CAMAON_BGCOFF_CROPON     GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaON  BGCOFF  CROPON
+GRID_PC_URBANOFF_vanGen_CAMAOFF_BGCOFF_CROPON    GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaOFF BGCOFF  CROPON
+GRID_PC_URBANON_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANON  Campbell CaMaON  BGCON   CROPOFF
+GRID_PC_URBANON_CAMBELL_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANON  Campbell CaMaOFF BGCON   CROPOFF
+GRID_PC_URBANON_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaON  BGCON   CROPOFF
+GRID_PC_URBANON_vanGen_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_PC_URBANOFF_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANOFF Campbell CaMaON  BGCON   CROPOFF
+GRID_PC_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPOFF    GRID LULC_IGBP_PC  URBANOFF Campbell CaMaOFF BGCON   CROPOFF
+GRID_PC_URBANOFF_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaON  BGCON   CROPOFF
+GRID_PC_URBANOFF_vanGen_CAMAOFF_BGCON_CROPOFF     GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_PC_URBANON_CAMBELL_CAMAON_BGCOFF_CROPOFF     GRID LULC_IGBP_PC  URBANON  Campbell CaMaON  BGCOFF  CROPOFF
+GRID_PC_URBANON_CAMBELL_CAMAOFF_BGCOFF_CROPOFF    GRID LULC_IGBP_PC  URBANON  Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_PC_URBANON_vanGen_CAMAON_BGCOFF_CROPOFF      GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_PC_URBANON_vanGen_CAMAOFF_BGCOFF_CROPOFF     GRID LULC_IGBP_PC  URBANON  vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_PC_URBANOFF_CAMBELL_CAMAON_BGCOFF_CROPOFF    GRID LULC_IGBP_PC  URBANOFF Campbell CaMaON  BGCOFF  CROPOFF
+GRID_PC_URBANOFF_CAMBELL_CAMAOFF_BGCOFF_CROPOFF   GRID LULC_IGBP_PC  URBANOFF Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_PC_URBANOFF_vanGen_CAMAON_BGCOFF_CROPOFF     GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_PC_URBANOFF_vanGen_CAMAOFF_BGCOFF_CROPOFF    GRID LULC_IGBP_PC  URBANOFF vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_IGBP_URBANON_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP     URBANON  Campbell CaMaON  BGCON   CROPOFF
+GRID_IGBP_URBANON_CAMBELL_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP     URBANON  Campbell CaMaOFF BGCON   CROPOFF
+GRID_IGBP_URBANON_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP     URBANON  vanGenu  CaMaON  BGCON   CROPOFF
+GRID_IGBP_URBANON_vanGen_CAMAOFF_BGCON_CROPOFF	  GRID LULC_IGBP     URBANON  vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_IGBP_URBANOFF_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP     URBANOFF Campbell CaMaON  BGCON   CROPOFF
+GRID_IGBP_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPOFF  GRID LULC_IGBP     URBANOFF Campbell CaMaOFF BGCON   CROPOFF
+GRID_IGBP_URBANOFF_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_IGBP     URBANOFF vanGenu  CaMaON  BGCON   CROPOFF
+GRID_IGBP_URBANOFF_vanGen_CAMAOFF_BGCON_CROPOFF   GRID LULC_IGBP     URBANOFF vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_IGBP_URBANON_CAMBELL_CAMAON_BGCOFF_CROPOFF   GRID LULC_IGBP     URBANON  Campbell CaMaON  BGCOFF  CROPOFF
+GRID_IGBP_URBANON_CAMBELL_CAMAOFF_BGCOFF_CROPOFF  GRID LULC_IGBP     URBANON  Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_IGBP_URBANON_vanGen_CAMAON_BGCOFF_CROPOFF    GRID LULC_IGBP     URBANON  vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_IGBP_URBANON_vanGen_CAMAOFF_BGCOFF_CROPOFF   GRID LULC_IGBP     URBANON  vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_IGBP_URBANOFF_CAMBELL_CAMAON_BGCOFF_CROPOFF  GRID LULC_IGBP     URBANOFF Campbell CaMaON  BGCOFF  CROPOFF
+GRID_IGBP_URBANOFF_CAMBELL_CAMAOFF_BGCOFF_CROPOFF GRID LULC_IGBP     URBANOFF Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_IGBP_URBANOFF_vanGen_CAMAON_BGCOFF_CROPOFF   GRID LULC_IGBP     URBANOFF vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_IGBP_URBANOFF_vanGen_CAMAOFF_BGCOFF_CROPOFF  GRID LULC_IGBP     URBANOFF vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_USGS_URBANON_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_USGS     URBANON  Campbell CaMaON  BGCON   CROPOFF
+GRID_USGS_URBANON_CAMBELL_CAMAOFF_BGCON_CROPOFF	  GRID LULC_USGS     URBANON  Campbell CaMaOFF BGCON   CROPOFF
+GRID_USGS_URBANON_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_USGS     URBANON  vanGenu  CaMaON  BGCON   CROPOFF
+GRID_USGS_URBANON_vanGen_CAMAOFF_BGCON_CROPOFF	  GRID LULC_USGS     URBANON  vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_USGS_URBANOFF_CAMBELL_CAMAON_BGCON_CROPOFF	  GRID LULC_USGS     URBANOFF Campbell CaMaON  BGCON   CROPOFF
+GRID_USGS_URBANOFF_CAMBELL_CAMAOFF_BGCON_CROPOFF  GRID LULC_USGS     URBANOFF Campbell CaMaOFF BGCON   CROPOFF
+GRID_USGS_URBANOFF_vanGen_CAMAON_BGCON_CROPOFF	  GRID LULC_USGS     URBANOFF vanGenu  CaMaON  BGCON   CROPOFF
+GRID_USGS_URBANOFF_vanGen_CAMAOFF_BGCON_CROPOFF   GRID LULC_USGS     URBANOFF vanGenu  CaMaOFF BGCON   CROPOFF
+GRID_USGS_URBANON_CAMBELL_CAMAON_BGCOFF_CROPOFF   GRID LULC_USGS     URBANON  Campbell CaMaON  BGCOFF  CROPOFF
+GRID_USGS_URBANON_CAMBELL_CAMAOFF_BGCOFF_CROPOFF  GRID LULC_USGS     URBANON  Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_USGS_URBANON_vanGen_CAMAON_BGCOFF_CROPOFF    GRID LULC_USGS     URBANON  vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_USGS_URBANON_vanGen_CAMAOFF_BGCOFF_CROPOFF   GRID LULC_USGS     URBANON  vanGenu  CaMaOFF BGCOFF  CROPOFF
+GRID_USGS_URBANOFF_CAMBELL_CAMAON_BGCOFF_CROPOFF  GRID LULC_USGS     URBANOFF Campbell CaMaON  BGCOFF  CROPOFF
+GRID_USGS_URBANOFF_CAMBELL_CAMAOFF_BGCOFF_CROPOFF GRID LULC_USGS     URBANOFF Campbell CaMaOFF BGCOFF  CROPOFF
+GRID_USGS_URBANOFF_vanGen_CAMAON_BGCOFF_CROPOFF   GRID LULC_USGS     URBANOFF vanGenu  CaMaON  BGCOFF  CROPOFF
+GRID_USGS_URBANOFF_vanGen_CAMAOFF_BGCOFF_CROPOFF  GRID LULC_USGS     URBANOFF vanGenu  CaMaOFF BGCOFF  CROPOFF

.github/workflows/build_CoLM_gnu.yml

@@ -0,0 +1,87 @@
+name: Build_CoLM202X_gnu
+on:
+  pull_request:
+    branches: 
+      - master
+    paths-ignore:
+      - 'postprocess/**'
+      - 'preprocess/**'
+      - 'run/**'
+      - 'README.md'
+      - '.gitignore'
+      - '**/**.sh'
+  push:
+    branches:
+      - master
+
+  workflow_dispatch:
+
+jobs:
+  Build-CoLM-gnu:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, ubuntu-20.04]
+        mpi: ['mpich', 'openmpi', 'intelmpi']
+        toolchain:
+          - {compiler: gcc, version: 13}
+          - {compiler: gcc, version: 12}
+          - {compiler: gcc, version: 11}
+          - {compiler: gcc, version: 10}
+          - {compiler: gcc, version:  9}
+       # include:
+       #   - os: ubuntu-latest
+       #     toolchain: {compiler: gcc, version: 12}
+        exclude:
+          - os: ubuntu-20.04
+            toolchain: {compiler: gcc, version: 12}
+          - os: ubuntu-latest
+            toolchain: {compiler: gcc, version: 9}
+
+    steps:
+     - uses: actions/checkout@v4
+     - uses: mpi4py/setup-mpi@v1
+       with:
+          mpi: ${{ matrix.mpi }}
+     - uses: fortran-lang/setup-fortran@v1
+       id: setup-fortran
+       with:
+          compiler: ${{ matrix.toolchain.compiler }}
+          version: ${{ matrix.toolchain.version }} 
+     - name: Install netcdf-fortran library
+       shell: bash -l {0}
+       run: sudo apt update && sudo apt install -y netcdf-bin libnetcdf-dev libnetcdff-dev
+     - name: Test mpi
+       #run: mpif90 -v
+       run: which mpif90
+     #- name: Test netcdf
+     #  run: nc-config --all
+     - name: Build CoLM202X
+     #  run: make clean && make all
+       run: |
+            cd ${{ github.workspace }}
+            TestList=./.github/workflows/TestCaseLists
+            for CaseName in `awk '{print $1}' $TestList`
+            do
+              echo "+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+              echo "Create test cases"
+              echo $CaseName
+              echo "+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++"
+ 
+              echo defineh `cat $TestList |grep $CaseName |awk '{print $2,$3,$4,$5,$6,$7,$8}'`
+              ./.github/workflows/create_defineh.bash `cat $TestList |grep $CaseName |awk '{print $2,$3,$4,$5,$6,$7,$8}'`
+
+              echo "Create test case $CaseName Complete!"
+              cat ./include/define.h
+
+              echo "...................................................................."
+              echo "Start Compilation $CaseName"
+              echo "...................................................................."
+
+              make clean && make all
+            done
+
+            echo "----------------------------------------------------------------------"
+            echo "All test cases are compiled successfully! "
+            echo "----------------------------------------------------------------------"

.github/workflows/create_defineh.bash

@@ -0,0 +1,200 @@
+#!/bin/bash
+#./create_defineh.bash GRID LULC_IGBP_PFT URBANON CaMaON BGCON
+echo $1 $2 $3 $4 $5 $6 $7 
+
+if [ $1 = "GRID" ];then
+   GRIDBASE="#define GRIDBASED"
+   CATCHMENT="#undef CATCHMENT"
+   UNSTRUCTU="#undef UNSTRUCTURED"
+   SINGLEPOI="#undef SinglePoint"
+else
+   if [ $1 = "CATCHMENT" ];then
+      GRIDBASE="#undef GRIDBASED"
+      CATCHMENT="#define CATCHMENT"
+      UNSTRUCTU="#undef UNSTRUCTURED"
+      SINGLEPOI="#undef SinglePoint"
+   else
+      if [ $1 = "UNSTRUCTURED" ];then
+         GRIDBASE="#undef GRIDBASED"
+         CATCHMENT="#undef CATCHMENT"
+         UNSTRUCTU="#define UNSTRUCTURED"
+         SINGLEPOI="#undef SinglePoint"
+      else
+	 if [ $1 = "SinglePoint" ];then
+            GRIDBASE="#undef GRIDBASED"
+            CATCHMENT="#undef CATCHMENT"
+            UNSTRUCTU="#undef UNSTRUCTURED"
+            SINGLEPOI="#define SinglePoint"
+	 else
+   	    echo "Error in argument 1, try (GRID, CATCHMENT, UNSTRUCTURED, SinglePoint)"
+	    exit
+	 fi
+      fi
+   fi
+fi
+#echo $GRIDBASE
+#echo $CATCHMENT
+#echo $UNSTRUCTU
+#echo $SINGLEPOI
+if [ $2 = "LULC_USGS" ];then
+   LULC_USGS="#define LULC_USGS"
+   LULC_IGBP="#undef LULC_IGBP"
+   LULC_IGBP_PFT="#undef LULC_IGBP_PFT"
+   LULC_IGBP_PC="#undef LULC_IGBP_PC"
+else
+   if [ $2 = "LULC_IGBP" ];then
+      LULC_USGS="#undef LULC_USGS"
+      LULC_IGBP="#define LULC_IGBP"
+      LULC_IGBP_PFT="#undef LULC_IGBP_PFT"
+      LULC_IGBP_PC="#undef LULC_IGBP_PC"
+   else
+      if [ $2 = "LULC_IGBP_PFT" ];then
+         LULC_USGS="#undef LULC_USGS"
+         LULC_IGBP="#undef LULC_IGBP"
+         LULC_IGBP_PFT="#define LULC_IGBP_PFT"
+         LULC_IGBP_PC="#undef LULC_IGBP_PC"
+      else
+	 if [ $2 = "LULC_IGBP_PC" ];then
+            LULC_USGS="#undef LULC_USGS"
+            LULC_IGBP="#undef LULC_IGBP"
+            LULC_IGBP_PFT="#undef LULC_IGBP_PFT"
+            LULC_IGBP_PC="#define LULC_IGBP_PC"
+	 else
+	    echo "Error in argument 2, try (LULC_USGS, LULC_IGBP, LULC_IGBP_PFT, LULC_IGBP_PC)"
+	    exit
+	 fi
+      fi
+   fi
+fi
+
+#echo $LULC_USGS
+#echo $LULC_IGBP
+#echo $LULC_IGBP_PFT
+#echo $LULC_IGBP_PC
+
+if [ $3 = "URBANON" ];then
+   URBAN="#define URBAN_MODEL"
+else
+   if [ $3 = "URBANOFF" ];then
+      URBAN="#undef URBAN_MODEL"
+   else
+      echo "Error in argument 3, try (URBANON, URBANOFF)"
+      exit
+   fi 
+fi
+#echo $URBAN
+
+if [ $4 = "Campbell" ];then
+   CAMPBELL="#define Campbell_SOIL_MODEL"
+   VENGENU="#undef vanGenuchten_Mualem_SOIL_MODEL"
+else
+   if [ $4 = "vanGenu" ];then
+      CAMPBELL="#undef Campbell_SOIL_MODEL"
+      VENGENU="#define vanGenuchten_Mualem_SOIL_MODEL"
+   else
+      echo "Error in argument 4, try (Campbell, vanGenu)"
+      exit
+   fi
+fi
+
+#echo $CAMPBELL
+#echo $VENGENU
+
+if [ $5 = "CaMaON" ];then
+   CaMa="#define CaMa_Flood"
+else
+   if [ $5 = "CaMaOFF" ];then
+      CaMa="#undef CaMa_Flood"
+   else
+      echo "Error in argument 5, try (CaMaON, CaMaOFF)"
+      exit
+   fi
+fi
+#echo $CaMa
+
+if [ $6 = "BGCON" ];then
+   BGC="#define BGC"
+else
+   if [ $6 = "BGCOFF" ];then
+      BGC="#undef BGC"
+   else
+      echo "Error in argument 6, try (BGCON, BGCOFF)"
+      exit
+   fi
+fi
+#echo $BGC
+
+if [ $7 = "CROPON" ];then
+   CROP="#define CROP"
+else
+   if [ $7 = "CROPOFF" ];then
+      CROP="#undef CROP"
+   else
+      echo "Error in argument 7, try (CROPON, CROPOFF)"
+   fi
+fi
+
+cat>include/define.h<<EOF
+! 1. Spatial structure:
+!    Select one of the following options.
+$GRIDBASE
+$CATCHMENT
+$UNSTRUCTU
+$SINGLEPOI
+
+! 2. Land TYPE classification :
+!    Select one of the following options.
+$LULC_USGS
+$LULC_IGBP
+$LULC_IGBP_PFT
+$LULC_IGBP_PC
+! 2.1 Urban model setting (put it temporarily here):
+$URBAN
+#undef URBAN_LCZ
+
+! 3. If defined, debug information is output.
+#define CoLMDEBUG
+! 3.1 If defined, range of variables is checked.
+#define RangeCheck
+! 3.2 If defined, surface data in vector is mapped to gridded data for checking.
+#undef SrfdataDiag
+
+! 4. If defined, MPI parallelization is enabled.
+#define  USEMPI
+!    Conflict: not used when defined SingPoint.
+#if (defined SinglePoint)
+#undef USEMPI
+#endif
+
+! 5. Hydrological process options.
+! 5.1 Two soil hydraulic models can be used.
+$CAMPBELL
+$VENGENU
+! 5.2 If defined, lateral flow is modeled.
+#define  LATERAL_FLOW
+!    Conflicts :
+#ifndef CATCHMENT
+#undef LATERAL_FLOW
+#endif
+
+! 6. If defined, CaMa-Flood model will be used.
+$CaMa
+
+! 7. If defined, BGC model is used.
+$BGC
+
+!    Conflicts :  only used when LULC_IGBP_PFT is defined.
+#ifndef LULC_IGBP_PFT
+#undef BGC
+#endif
+
+! 7.1 If defined, CROP model is used
+$CROP
+!    Conflicts : only used when BGC is defined
+#ifndef BGC
+#undef CROP
+#endif
+
+! 8. If defined, open Land use and land cover change mode.
+#undef LULCC
+EOF

.gitignore

@@ -5,3 +5,5 @@ run/log_CaMa.txt
 __pycache__
 *.o
 *.mod
+.vscode
+.bld

CaMa/src/MOD_CaMa_Vars.F90

@@ -324,7 +324,7 @@ SUBROUTINE hist_out_cama (file_hist, itime_in_file)
          D2RIVVEL_AVG, D2GDWRTN_AVG, D2RUNOFF_AVG, D2ROFSUB_AVG,               &
          D2OUTFLW_MAX, D2STORGE_MAX, D2RIVDPH_MAX, &
          d2daminf_avg,D2WEVAPEX_AVG,D2WINFILTEX_AVG,D2LEVDPH !!! added
-      USE MOD_Vars_2DFluxes
+ !      USE MOD_Vars_2DFluxes
 
       IMPLICIT NONE