fix: Fix snakedeploy hanging forever (#67)

snakemake · Oct 16, 2024 · f6d1ce5 · f6d1ce5
1 parent 07f2876
commit f6d1ce5
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snakedeploy/conda.py b/snakedeploy/conda.py
@@ -193,7 +193,7 @@ def get_pkg_versions(conda_env_path):
                     self.exec_conda(f"list --json --prefix {tmpdir}").stdout
                 )
                 pkg_versions = {pkg["name"]: pkg["version"] for pkg in results}
-                self.exec_conda(f"env remove --prefix {tmpdir}")
+                self.exec_conda(f"env remove --prefix {tmpdir} -y")
             return pkg_versions, results
 
         logger.info("Resolving prior versions...")
@@ -292,7 +292,7 @@ def update_pinning(self, conda_env_path, pr=None):
                         is_updated=old_content is not None,
                         msg=msg,
                     )
-            self.exec_conda(f"env remove --prefix {tmpdir}")
+            self.exec_conda(f"env remove --prefix {tmpdir} -y")
 
     def exec_conda(self, subcmd):
         return sp.run(