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fix: update plugin to include docs and fix docker build #28

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fix: update plugin to include docs and fix docker build

fix: update plugin to include docs and fix docker build #28

Workflow file for this run

.github/workflows/ci.yml at 402ba3c
name: CI
on:
pull_request: []
jobs:
formatting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v4
- name: Install poetry
run: pipx install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.11"
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check formatting
run: poetry run black --check .
linting:
runs-on: ubuntu-latest
steps:
- name: Check out the code
uses: actions/checkout@v3
- name: Install poetry
run: pipx install poetry
- name: Determine dependencies
run: poetry lock
- uses: actions/setup-python@v4
with:
python-version: "3.11"
cache: poetry
- name: Install Dependencies using Poetry
run: poetry install
- name: Check code
run: poetry run flake8
# testing:
# runs-on: ubuntu-latest
# steps:
# - name: Check out the code
# uses: actions/checkout@v3
# - name: Install poetry
# run: pipx install poetry
# - name: Determine dependencies
# run: poetry lock
# - uses: actions/setup-python@v4
# with:
# python-version: "3.9"
# cache: poetry
# - name: Install Dependencies using Poetry
# run: poetry install
# - name: Run pytest
# run: poetry run coverage run -m pytest tests/tests.py
# - name: Run Coverage
# run: poetry run coverage report -m
# testing:
# runs-on: ubuntu-latest
# permissions:
# packages: read
# strategy:
# fail-fast: false
# matrix:
# container: ["fluxrm/flux-sched:jammy"]
# container:
# image: ${{ matrix.container }}
# options: "--platform=linux/amd64 --user root -it"
# name: ${{ matrix.container }}
# steps:
# - name: Update environment for Flux
# run: |
# echo "/opt/conda/bin" >> $GITHUB_PATH
# echo "/root/.local/bin" >> $GITHUB_PATH
# echo "FLUX_MODULE_PATH=${FLUX_MODULE_PATH}:/usr/lib/x86_64-linux-gnu/flux/modules" >> ${GITHUB_ENV}
# - name: Make Space
# run: |
# rm -rf /usr/share/dotnet
# rm -rf /opt/ghc
# - uses: actions/checkout@v4
# - name: Install poetry
# run: |
# sudo apt-get install -y python3-pip
# ln -s $(which python3) /bin/python
# - name: Install dependencies
# run: |
# python3 -m pip install git+https://github.com/vsoch/snakemake@update-lazy-property-import
# python3 -m pip install .
# - name: Start Flux and Test Workflow
# run: |
# We must have python3->python accessible for this to work
# su fluxuser
# echo "ROOT=$PWD" >> $GITHUB_ENV
# cd example
# which snakemake
# python3 -m pip freeze | grep snakemake
# pip freeze | grep snakemake
# flux start snakemake --show-failed-logs --verbose --executor flux --jobs=1 --no-shared-fs
# - name: Test Flux with Conda
# run: |
# conda python needs to be after system python
# wget https://repo.anaconda.com/archive/Anaconda3-2023.09-0-Linux-x86_64.sh
# sudo bash Anaconda3-2023.09-0-Linux-x86_64.sh -p /opt/conda -b
# export PATH=$PATH:/opt/conda/bin
# Now install again
# python3 -m pip install git+https://github.com/vsoch/snakemake@update-lazy-property-import
# cd $ROOT
# python3 -m pip install .
# which python
# which conda
# cd $ROOT/example/conda
# flux start snakemake --show-failed-logs --verbose --executor flux --jobs=1 --use-conda --conda-frontend=conda