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1,061 Open 716 Closed
1,061 Open 716 Closed
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Issues list

global conda directive error: The package snakemake-storage-plugin-http is not installed bug Something isn't working
#3252 opened Jan 13, 2025 by danpal96
Support for uv in the integrated package management? enhancement New feature or request
#3251 opened Jan 13, 2025 by adonath
1
Catch error codes of commands executed under the shell directive enhancement New feature or request
#3250 opened Jan 13, 2025 by harrymatthews50
error libmamba Non-conda folder exists at prefix error while running snakemake bug Something isn't working
#3249 opened Jan 11, 2025 by enes-ak
The issue with --apptainer-prefix and -d bug Something isn't working
#3248 opened Jan 11, 2025 by jmzhang1911
Error handling in snakemake scheduler enhancement New feature or request
#3247 opened Jan 10, 2025 by fujch7
1
Using Multiple Rules from the Same Module Overwrites Aliases in Snakemake bug Something isn't working
#3243 opened Jan 2, 2025 by JieWu-GitHub
Add support for rule grouping to improve workflow organization enhancement New feature or request
#3242 opened Dec 31, 2024 by jiangyun-fun
Worker jobs under SLURM do not receive SIGTERM bug Something isn't working
#3241 opened Dec 29, 2024 by peterjc
More flexible graph display in Snakemake reports enhancement New feature or request
#3239 opened Dec 21, 2024 by johanneskoester
Independent DAG eval due to rerun triggers causes unexpected re-execution and file corruption with executors bug Something isn't working
#3234 opened Dec 17, 2024 by lczech
Minor bug: --rerun-triggers cannot be specific last when also specifying targets bug Something isn't working
#3233 opened Dec 16, 2024 by lczech
Invalid SyntaxWarning: invalid escape sequence bug Something isn't working
#3232 opened Dec 12, 2024 by erfanshekarriz
2
Error: Error loading Snakemake plugin dryrun: The package snakemake-executor-plugin-dryrun is not installed. bug Something isn't working
#3231 opened Dec 11, 2024 by Ulthran
1
hisat2 aligned issue bug Something isn't working
#3230 opened Dec 11, 2024 by yhj-j
1
Stable suport for ARM processors enhancement New feature or request
#3228 opened Dec 10, 2024 by sandrorsduarte
How long could you merge the bug fixation #1708 bug Something isn't working
#3226 opened Dec 9, 2024 by XinWang19
Wildcard values modified in some circumstances bug Something isn't working
#3221 opened Nov 27, 2024 by irr-github
Better way to signal an error to the user enhancement New feature or request
#3214 opened Nov 18, 2024 by jlumpe
1
Code changes in python rules no longer trigger re-running of workflows bug Something isn't working
#3213 opened Nov 18, 2024 by royjacobson
FileNotFoundError for global.yaml When Loading Module via github() bug Something isn't working
#3212 opened Nov 16, 2024 by sreichl
Snakemake Fails with Space in Path When Using run Statement bug Something isn't working
#3211 opened Nov 16, 2024 by Wytamma
1
Snakemake not finding input files bug Something isn't working
#3210 opened Nov 15, 2024 by Dm572
1
Add key to rule definitions to postpone scheduling of a job based on runtime-dependent user criteria enhancement New feature or request
#3209 opened Nov 15, 2024 by wiedenhoeft
Modernize logging and support for monitoring as plugins enhancement New feature or request
#3207 opened Nov 14, 2024 by JRodez
1
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