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1,041 Open 690 Closed
1,041 Open 690 Closed
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Issues list

Using snakemake -q all does not silence stdout and stderr from rules bug Something isn't working
#3152 opened Oct 17, 2024 by peterjc
2
Callbacks from DAG .execute_workflow() needed for progress bar enhancement New feature or request
#3151 opened Oct 17, 2024 by peterjc
Sequential execution in one script of parallely defined rules. enhancement New feature or request
#3143 opened Oct 15, 2024 by gatoniel
--generate-unit-tests will raise error in 8.20.1 or newer version bug Something isn't working
#3137 opened Oct 13, 2024 by jiangyun-fun
Question: Can you make an execute a snakemake workflow in pure python?
#3136 opened Oct 11, 2024 by harrymatthews50
Running Snakemake --touch gives PulpSolverError bug Something isn't working
#3128 opened Oct 8, 2024 by tbenavi1
2
Support standard Python virtual env. for rules enhancement New feature or request
#3124 opened Oct 7, 2024 by ccoulombe
Announcement: Snakemake hackathon 2025 at CERN, call for participants! enhancement New feature or request
#3123 opened Oct 7, 2024 by johanneskoester
1
Remove temporary paramiko version constraint enhancement New feature or request
#3120 opened Oct 7, 2024 by coderabbitai bot
1
Remove temporary paramiko version constraint enhancement New feature or request
#3119 opened Oct 7, 2024 by coderabbitai bot
snakemake --dag fails if there are ambiguities because workflow.execution_settings is None bug Something isn't working
#3118 opened Oct 7, 2024 by tesujimath
1
mamba 2.0.0 doesn't support the --no-default-packages option bug Something isn't working
#3108 opened Sep 30, 2024 by edbennett
3
Be able to depend on individual dataset(s) within an HDF5 file enhancement New feature or request
#3106 opened Sep 26, 2024 by edbennett
snakemake dependency 'datrie' requires fragile C extention compiles on modern python bug Something isn't working
#3105 opened Sep 25, 2024 by samimia-swks
1
Enhance Report Plugin Flexibility: Template Language Support, File Rendering Options, and Report Structure Customization enhancement New feature or request
#3102 opened Sep 25, 2024 by MatthiasLienhard
1
Restoring cached folders results in a clock skew error bug Something isn't working
#3097 opened Sep 20, 2024 by karl-az
Rerun triggers not causing dependent steps to be rerun bug Something isn't working
#3095 opened Sep 19, 2024 by powelleric
4
snakemake slurm seem to limit number of threads bug Something isn't working
#3092 opened Sep 19, 2024 by benjamin-lieser
6
Conda + container fails to forward apptainer-args bug Something isn't working
#3088 opened Sep 17, 2024 by karl-az
Snakemake output prints sensitive information with storage plugin bug Something isn't working
#3087 opened Sep 14, 2024 by MattMonk
1
Visually group modules into single rules via --modulegraph enhancement New feature or request
#3086 opened Sep 11, 2024 by irm-codebase
1
Report rendering of rule fails if conda environment contains pip dependency bug Something isn't working
#3084 opened Sep 11, 2024 by votti
unintuitive behavior of --delete-all-output bug Something isn't working
#3079 opened Sep 8, 2024 by ctb
Local input/output files with storage-fs and slurm plugin bug Something isn't working
#3071 opened Sep 5, 2024 by raphaelbetschart
Print a "stack trace" after a MissingInputException enhancement New feature or request
#3063 opened Aug 31, 2024 by thekswenson
ProTip! What’s not been updated in a month: updated:<2024-09-19.