refactor: remove finch conversion, support zstd and lzma in wasm

sourmash-bio · Feb 3, 2025 · d173ebf · d173ebf
1 parent 409da8f
commit d173ebf
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Showing 4 changed files with 25 additions and 223 deletions.
diff --git a/Cargo.lock b/Cargo.lock
diff --git a/src/core/Cargo.toml b/src/core/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "sourmash"
-version = "0.18.0"
+version = "0.19.0"
 authors = ["Luiz Irber <[email protected]>", "N. Tessa Pierce-Ward <[email protected]>", "C. Titus Brown <[email protected]>"]
 description = "tools for comparing biological sequences with k-mer sketches"
 repository = "https://github.com/sourmash-bio/sourmash"
@@ -19,7 +19,6 @@ crate-type = ["lib", "staticlib", "cdylib"]
 bench = false
 
 [features]
-from-finch = ["dep:finch"]
 parallel = ["dep:rayon"]
 maturin = []
 branchwater = ["dep:rocksdb", "parallel"]
@@ -34,7 +33,6 @@ cfg-if = "1.0"
 counter = "0.6.0"
 csv = "1.3.1"
 enum_dispatch = "0.3.13"
-finch = { version = "0.6.0", optional = true }
 fixedbitset = "0.4.0"
 getset = "0.1.4"
 histogram = "0.11.2"
@@ -44,7 +42,7 @@ md5 = "0.7.0"
 memmap2 = "0.9.5"
 murmurhash3 = "0.0.5"
 needletail = { version = "0.6.1", default-features = false }
-niffler = { version = "2.4.0", default-features = false, features = [ "gz" ] }
+niffler = { version = "2.6.0", default-features = false, features = [ "gz", "zstd", "lzma" ] }
 nohash-hasher = "0.2.0"
 num-iter = "0.1.45"
 once_cell = "1.18.0"

diff --git a/src/core/src/from.rs b/src/core/src/from.rs
diff --git a/src/core/src/lib.rs b/src/core/src/lib.rs
@@ -37,9 +37,6 @@ pub mod signature;
 pub mod sketch;
 pub mod storage;
 
-#[cfg(feature = "from-finch")]
-pub mod from;
-
 use cfg_if::cfg_if;
 use murmurhash3::murmurhash3_x64_128;