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Lab 4 update
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bmc committed Aug 3, 2016
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# MAGIC ![ML Logo](http://spark-mooc.github.io/web-assets/images/CS190.1x_Banner_300.png)
# MAGIC # Principal Component Analysis Lab
# MAGIC
# MAGIC This lab delves into exploratory analysis of neuroscience data, specifically using principal component analysis (PCA) and feature-based aggregation. We will use a dataset of light-sheet imaging recorded by the [Ahrens Lab](http://www.janelia.org/lab/ahrens-lab) at Janelia Research Campus, and hosted on the CodeNeuro [data repository](http://datasets.codeneuro.org).
# MAGIC This lab delves into exploratory analysis of neuroscience data, specifically using principal component analysis (PCA) and feature-based aggregation. We will use a dataset of light-sheet imaging recorded by the [Ahrens Lab](http://www.janelia.org/lab/ahrens-lab) at Janelia Research Campus.
# MAGIC
# MAGIC Our dataset is generated by studying the movement of a larval [zebrafish](http://en.wikipedia.org/wiki/Zebrafish), an animal that is especially useful in neuroscience because it is transparent, making it possible to record activity over its entire brain using a technique called [light-sheet microscopy](http://en.wikipedia.org/wiki/Light_sheet_fluorescence_microscopy). Specifically, we'll work with time-varying images containing patterns of the zebrafish's neural activity as it is presented with a moving visual pattern. Different stimuli induce different patterns across the brain, and we can use exploratory analyses to identify these patterns. Read ["Mapping brain activity at scale with cluster computing"](http://thefreemanlab.com/work/papers/freeman-2014-nature-methods.pdf) for more information about these kinds of analyses.
# MAGIC
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