Example of visualisations and analysis using a short time series available from Tara Oceans
RStudio:
Binder:
Quick Start
Open the binder and then click “knit” this will produce and html document with the Rcode and figures.
Note that there are only four time points associated with this data therefore, whilst it serves as a good example for the code - the analysis are very limited.
Example Output: Abundance of family over time
Summary
The vizualisations are relative abundance of Bacteria from Tara ocean amiplicon sequencing project. (https://www.ebi.ac.uk/metagenomics/studies/MGYS00000492#analysis)
The code uses three .csv files:
- Abundance table
- Metadata
- Taxa list
Authors: Georgina L. Brennan github ID: G-Brennan ORCID: ORCID: 0000-0003-2045-757X
Links Zenodo Binder, doi: LINK_TO_BINDER
Github Binder: LINK_TO_BINDER
Github Repository: https://github.com/speeding-up-science-workshops/<REPO_NAME>