Workshop2019

Merge of workflow and dada2 new tutorial material for 2019 workshops: ASM, STAMPS

Syllabus for one day workshop with introductory lectures on:

• Exact ASVs
• DADA2 Method
• DADA2 Workflow
• Heterogeneous data and data types in R
• Phyloseq data structure
• Phyloseq wrappers for visualization
• Phyloseq data import and manipulations
• Rank based methods for testing.
• Multivariate methods, PCA, PCoA and other ordinations.
• Using networks for co-occurrence testing with factor covariates.

Where/When

• Date/Time: 08:00 AM - 04:00 PM, 06/20/2019
• Room: 2001 West (Moscone, SF)

Schedule

• 8.00 : Introduction and setup.
• 8.30 - 9.15 Benjamin Callahan : ASVs and dada2
• 9.15 - 10.00 : Benjamin Callahan : dada2 workflow and lab
• Break: 10-10.20
• 10.20 - 11.15 Susan Holmes; Heterogeneous data, glossary, data types in R.
• 11.20 - 12.30 Paul Joey McMurdie: Importing data into phyloseq, plotting trees, diversity, transforming data and lab for participants to do.
• 12.30 - 1.30 Lunch break time 12.30-1.30
• 1.30 - 2.15 : Paul Joey McMurdie: Ordination and networks with phyloseq: examples and lab.
• 2.15 - 3.30: Susan Holmes: Robust Testing using ranks and networks.
• 3.30-4.00: Questions and Answers.