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added information on the existing CALIBER phenotype components used i…
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…n the diabetes algorithm
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@spiros
spiros committed Jun 28, 2024
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4 changes: 4 additions & 0 deletions README.md
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Expand Up @@ -12863,6 +12863,10 @@ ELSE if there are no diabdiag_gprd records for this patient:

ELSE classify as no 'Diabetes'
~~~

**NOTE**: This algorithm uses components from an existing phenotyping algorithm created by Julie George and Anoop Shah for the CALIBER project: [dm_cprd](/primary_care/CPRD_caliber_dm_cprd.csv), [diabdiag_cprd](/primary_care/CPRD_caliber_diabdiag_cprd.csv) and [dm_hes](/secondary_care/ICD_caliber_dm_hes.csv). More information on the algorithm in the associated publication [Lancet Diabetes Endocrinol
. 2015 Feb;3(2):105-13. doi: 10.1016/S2213-8587(14)70219-0. Epub 2014 Nov 11.](https://www.sciencedirect.com/science/article/pii/S2213858714702190?via%3Dihub)

<h4>Primary care (<a href='https://github.com/spiros/chronological-map-phenotypes/tree/master//primary_care/CPRD_diabetes.csv'>CPRD_diabetes.csv</a>)</h4>
<table>
<thead>
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136 changes: 136 additions & 0 deletions primary_care/CPRD_caliber_diabdiag_cprd.csv
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"metadata","category","readcode","readterm","medcode"
"Name: diabdiag_cprd ",3,"C108.12","Type 1 diabetes mellitus",17858
"Version: 1 ",3,"C108.13","Type I diabetes mellitus",24423
"Source: CPRD ",3,"C108011","Type I diabetes mellitus with renal complications",61344
"Author: Anoop Shah ",3,"C108012","Type 1 diabetes mellitus with renal complications",21983
"Date: 18 Sep 2012 ",3,"C108211","Type I diabetes mellitus with neurological complications",49146
"Timestamp: 15.04 23-Apr-13 ",3,"C108212","Type 1 diabetes mellitus with neurological complications",61829
"Categories: ",3,"C108411","Unstable type I diabetes mellitus",60107
"3. Type I diabetes mellitus ",3,"C108412","Unstable type 1 diabetes mellitus",97474
"4. Type II diabetes mellitus ",3,"C108511","Type I diabetes mellitus with ulcer",51957
" ",3,"C108512","Type 1 diabetes mellitus with ulcer",68390
" ",3,"C108711","Type I diabetes mellitus with retinopathy",38161
" ",3,"C108712","Type 1 diabetes mellitus with retinopathy",41049
" ",3,"C108811","Type I diabetes mellitus - poor control",46850
" ",3,"C108812","Type 1 diabetes mellitus - poor control",45914
" ",3,"C108911","Type I diabetes mellitus maturity onset",63017
" ",3,"C108912","Type 1 diabetes mellitus maturity onset",97446
" ",3,"C108A11","Type I diabetes mellitus without complication",95992
" ",3,"C108D11","Type I diabetes mellitus with nephropathy",66872
" ",3,"C108E11","Type I diabetes mellitus with hypoglycaemic coma",42729
" ",3,"C108E12","Type 1 diabetes mellitus with hypoglycaemic coma",70766
" ",3,"C108F11","Type I diabetes mellitus with diabetic cataract",17545
" ",3,"C108H11","Type I diabetes mellitus with arthropathy",62352
" ",3,"C108J11","Type I diabetes mellitus with neuropathic arthropathy",60208
" ",3,"C108J12","Type 1 diabetes mellitus with neuropathic arthropathy",18230
" ",3,"C10E.00","Type 1 diabetes mellitus",1549
" ",3,"C10E.11","Type I diabetes mellitus",12455
" ",3,"C10E000","Type 1 diabetes mellitus with renal complications",47582
" ",3,"C10E100","Type 1 diabetes mellitus with ophthalmic complications",47649
" ",3,"C10E200","Type 1 diabetes mellitus with neurological complications",42831
" ",3,"C10E300","Type 1 diabetes mellitus with multiple complications",47650
" ",3,"C10E311","Type I diabetes mellitus with multiple complications",91942
" ",3,"C10E400","Unstable type 1 diabetes mellitus",43921
" ",3,"C10E411","Unstable type I diabetes mellitus",49949
" ",3,"C10E500","Type 1 diabetes mellitus with ulcer",18683
" ",3,"C10E511","Type I diabetes mellitus with ulcer",93878
" ",3,"C10E600","Type 1 diabetes mellitus with gangrene",69993
" ",3,"C10E700","Type 1 diabetes mellitus with retinopathy",18387
" ",3,"C10E711","Type I diabetes mellitus with retinopathy",95343
" ",3,"C10E800","Type 1 diabetes mellitus - poor control",35288
" ",3,"C10E900","Type 1 diabetes mellitus maturity onset",40682
" ",3,"C10E911","Type I diabetes mellitus maturity onset",96235
" ",3,"C10EA00","Type 1 diabetes mellitus without complication",69676
" ",3,"C10EA11","Type I diabetes mellitus without complication",62613
" ",3,"C10EB00","Type 1 diabetes mellitus with mononeuropathy",68105
" ",3,"C10EC00","Type 1 diabetes mellitus with polyneuropathy",46301
" ",3,"C10EC11","Type I diabetes mellitus with polyneuropathy",91943
" ",3,"C10ED00","Type 1 diabetes mellitus with nephropathy",10418
" ",3,"C10EE00","Type 1 diabetes mellitus with hypoglycaemic coma",39070
" ",3,"C10EF00","Type 1 diabetes mellitus with diabetic cataract",49554
" ",3,"C10EG00","Type 1 diabetes mellitus with peripheral angiopathy",93468
" ",3,"C10EH00","Type 1 diabetes mellitus with arthropathy",18642
" ",3,"C10EJ00","Type 1 diabetes mellitus with neuropathic arthropathy",54008
" ",3,"C10EK00","Type 1 diabetes mellitus with persistent proteinuria",30323
" ",3,"C10EL00","Type 1 diabetes mellitus with persistent microalbuminuria",30294
" ",3,"C10EM00","Type 1 diabetes mellitus with ketoacidosis",10692
" ",3,"C10EM11","Type I diabetes mellitus with ketoacidosis",62209
" ",3,"C10EN00","Type 1 diabetes mellitus with ketoacidotic coma",40837
" ",3,"C10EN11","Type I diabetes mellitus with ketoacidotic coma",66145
" ",3,"C10EP00","Type 1 diabetes mellitus with exudative maculopathy",22871
" ",3,"C10EP11","Type I diabetes mellitus with exudative maculopathy",97894
" ",3,"C10EQ00","Type 1 diabetes mellitus with gastroparesis",55239
" ",4,"C109.12","Type 2 diabetes mellitus",17859
" ",4,"C109.13","Type II diabetes mellitus",18219
" ",4,"C109011","Type II diabetes mellitus with renal complications",50225
" ",4,"C109012","Type 2 diabetes mellitus with renal complications",18209
" ",4,"C109111","Type II diabetes mellitus with ophthalmic complications",59725
" ",4,"C109112","Type 2 diabetes mellitus with ophthalmic complications",70316
" ",4,"C109211","Type II diabetes mellitus with neurological complications",67905
" ",4,"C109212","Type 2 diabetes mellitus with neurological complications",45919
" ",4,"C109411","Type II diabetes mellitus with ulcer",55075
" ",4,"C109412","Type 2 diabetes mellitus with ulcer",65704
" ",4,"C109511","Type II diabetes mellitus with gangrene",62107
" ",4,"C109512","Type 2 diabetes mellitus with gangrene",46150
" ",4,"C109611","Type II diabetes mellitus with retinopathy",58604
" ",4,"C109612","Type 2 diabetes mellitus with retinopathy",42762
" ",4,"C109711","Type II diabetes mellitus - poor control",24458
" ",4,"C109712","Type 2 diabetes mellitus - poor control",45913
" ",4,"C109A11","Type II diabetes mellitus with mononeuropathy",50813
" ",4,"C109B11","Type II diabetes mellitus with polyneuropathy",47409
" ",4,"C109C11","Type II diabetes mellitus with nephropathy",64571
" ",4,"C109C12","Type 2 diabetes mellitus with nephropathy",24836
" ",4,"C109D11","Type II diabetes mellitus with hypoglycaemic coma",56268
" ",4,"C109D12","Type 2 diabetes mellitus with hypoglycaemic coma",61071
" ",4,"C109E11","Type II diabetes mellitus with diabetic cataract",48192
" ",4,"C109E12","Type 2 diabetes mellitus with diabetic cataract",44779
" ",4,"C109F11","Type II diabetes mellitus with peripheral angiopathy",54899
" ",4,"C109F12","Type 2 diabetes mellitus with peripheral angiopathy",60699
" ",4,"C109G11","Type II diabetes mellitus with arthropathy",18143
" ",4,"C109G12","Type 2 diabetes mellitus with arthropathy",49869
" ",4,"C109H11","Type II diabetes mellitus with neuropathic arthropathy",47816
" ",4,"C109H12","Type 2 diabetes mellitus with neuropathic arthropathy",66965
" ",4,"C109J00","Insulin treated Type 2 diabetes mellitus",18278
" ",4,"C109J12","Insulin treated Type II diabetes mellitus",18264
" ",4,"C109K00","Hyperosmolar non-ketotic state in type 2 diabetes mellitus",36633
" ",4,"C10F.00","Type 2 diabetes mellitus",758
" ",4,"C10F.11","Type II diabetes mellitus",22884
" ",4,"C10F000","Type 2 diabetes mellitus with renal complications",18777
" ",4,"C10F011","Type II diabetes mellitus with renal complications",57278
" ",4,"C10F100","Type 2 diabetes mellitus with ophthalmic complications",47321
" ",4,"C10F200","Type 2 diabetes mellitus with neurological complications",34268
" ",4,"C10F211","Type II diabetes mellitus with neurological complications",98616
" ",4,"C10F300","Type 2 diabetes mellitus with multiple complications",65267
" ",4,"C10F311","Type II diabetes mellitus with multiple complications",43227
" ",4,"C10F400","Type 2 diabetes mellitus with ulcer",49074
" ",4,"C10F411","Type II diabetes mellitus with ulcer",91646
" ",4,"C10F500","Type 2 diabetes mellitus with gangrene",12736
" ",4,"C10F600","Type 2 diabetes mellitus with retinopathy",18496
" ",4,"C10F611","Type II diabetes mellitus with retinopathy",49655
" ",4,"C10F700","Type 2 diabetes mellitus - poor control",25627
" ",4,"C10F711","Type II diabetes mellitus - poor control",47315
" ",4,"C10F900","Type 2 diabetes mellitus without complication",47954
" ",4,"C10F911","Type II diabetes mellitus without complication",53392
" ",4,"C10FA00","Type 2 diabetes mellitus with mononeuropathy",62674
" ",4,"C10FA11","Type II diabetes mellitus with mononeuropathy",95351
" ",4,"C10FB00","Type 2 diabetes mellitus with polyneuropathy",18425
" ",4,"C10FB11","Type II diabetes mellitus with polyneuropathy",50527
" ",4,"C10FC00","Type 2 diabetes mellitus with nephropathy",12640
" ",4,"C10FD00","Type 2 diabetes mellitus with hypoglycaemic coma",46917
" ",4,"C10FD11","Type II diabetes mellitus with hypoglycaemic coma",98723
" ",4,"C10FE00","Type 2 diabetes mellitus with diabetic cataract",44982
" ",4,"C10FE11","Type II diabetes mellitus with diabetic cataract",93727
" ",4,"C10FF00","Type 2 diabetes mellitus with peripheral angiopathy",37806
" ",4,"C10FG00","Type 2 diabetes mellitus with arthropathy",59253
" ",4,"C10FH00","Type 2 diabetes mellitus with neuropathic arthropathy",35385
" ",4,"C10FJ00","Insulin treated Type 2 diabetes mellitus",1407
" ",4,"C10FJ11","Insulin treated Type II diabetes mellitus",64668
" ",4,"C10FK00","Hyperosmolar non-ketotic state in type 2 diabetes mellitus",34450
" ",4,"C10FL00","Type 2 diabetes mellitus with persistent proteinuria",26054
" ",4,"C10FL11","Type II diabetes mellitus with persistent proteinuria",60796
" ",4,"C10FM00","Type 2 diabetes mellitus with persistent microalbuminuria",18390
" ",4,"C10FM11","Type II diabetes mellitus with persistent microalbuminuria",85991
" ",4,"C10FN00","Type 2 diabetes mellitus with ketoacidosis",32627
" ",4,"C10FP00","Type 2 diabetes mellitus with ketoacidotic coma",51756
" ",4,"C10FQ00","Type 2 diabetes mellitus with exudative maculopathy",25591
" ",4,"C10FR00","Type 2 diabetes mellitus with gastroparesis",63690
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