(FORK COMMIT) Update unit tests to reflect excludedSnps behavior

Refs https://github.com/genepi/imputationserver/issues/137
statgen · Apr 18, 2024 · 809b951 · 809b951
1 parent 0d15b69
commit 809b951
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/test/java/genepi/imputationserver/steps/FastQualityControlTest.java b/src/test/java/genepi/imputationserver/steps/FastQualityControlTest.java
@@ -536,7 +536,7 @@ public void testQcStatisticsAllowAlleleSwitches() throws IOException {
 
 		// check statistics
 
-		assertTrue(context.hasInMemory("Excluded sites in total: 2,967"));
+		assertTrue(context.hasInMemory("Excluded sites in total: 121,176"));
 		assertTrue(context.hasInMemory("Allele switch: 118,209"));
 	}
 
@@ -556,7 +556,7 @@ public void testQcStatisticsDontAllowAlleleSwitches() throws IOException {
 
 		// check statistics
 
-		assertTrue(context.hasInMemory("Excluded sites in total: 2,967"));
+		assertTrue(context.hasInMemory("Excluded sites in total: 121,176"));
 		assertTrue(context.hasInMemory("Allele switch: 118,209"));
 		assertTrue(context.hasInMemory("<b>Error:</b> More than 33 allele switches have been detected. Imputation cannot be started!"));
 	}