(FORK COMMIT) Make release for 2.0.0-beta3: Requested additional user…

… note

files/imputationserver-beagle.yaml

@@ -1,7 +1,7 @@
 id: imputationserver-beagle
 name: Genotype Imputation supporting Beagle (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 2.0.0
+version: 2.0.0-beta3
 website: https://imputationserver.readthedocs.io
 category:
 

files/imputationserver-hla.yaml

@@ -1,7 +1,7 @@
 id: imputationserver-hla
 name: Genotype Imputation HLA (Minimac4)
 description: This is the new Michigan Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="http://imputationserver.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>).
-version: 2.0.0
+version: 2.0.0-beta3
 website: https://imputationserver.readthedocs.io
 category:
 

files/imputationserver-pgs.yaml

@@ -1,7 +1,7 @@
 id: imputationserver-pgs
 name: Polygenic Score Calculation
 description: "You can upload genotyped data and the application imputes your genotypes, performs ancestry estimation and finally calculates Polygenic Risk Scores.<br><br>No dataset at hand? No problem, download our example dataset: <a href=\"https://imputationserver.sph.umich.edu/resources/50-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 50-samples.zip</a><br><br>"
-version: 2.0.0
+version: 2.0.0-beta3
 website: https://imputationserver.readthedocs.io/en/latest/pgs/getting-started
 category:
 

files/minimac4.yaml

@@ -1,7 +1,7 @@
 id: imputationserver
 name: Genotype Imputation (Minimac4)
 description: This is the new Imputation Server Pipeline using <a href="https://github.com/statgen/Minimac4">Minimac4</a>. Documentation can be found <a href="https://topmedimpute.readthedocs.io/en/latest/">here</a>.<br><br>If your input data is <b>GRCh37/hg19</b> please ensure chromosomes are encoded without prefix  (e.g. <b>20</b>).<br>If your input data is <b>GRCh38/hg38</b> please ensure chromosomes are encoded with prefix 'chr' (e.g. <b>chr20</b>). <br><br>There is a limit of three concurrent jobs per person. The TOPMed imputation server is a free resource, and these limits allow us to provide service to a wide audience. We reserve the right to terminate users who violate this policy.
-version: 2.0.0-beta2
+version: 2.0.0-beta3
 website: https://topmedimpute.readthedocs.io/en/latest/
 category:
 

pom.xml

@@ -5,7 +5,7 @@
 
 	<groupId>genepi</groupId>
 	<artifactId>imputationserver</artifactId>
-	<version>2.0.0-beta2</version>
+	<version>2.0.0-beta3</version>
 	<packaging>jar</packaging>
 	<name>University of Michigan Imputation Server</name>
 	<url>http://maven.apache.org</url>

src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java

@@ -24,7 +24,7 @@
 
 public class ImputationPipeline {
 
-	public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta2";
+	public static final String PIPELINE_VERSION = "michigan-imputationserver-2.0.0-beta3";
 
 	public static final String IMPUTATION_VERSION = "minimac-v4.1.6";