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Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.10, and my favorite packages installed

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GPL-3.0 license
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ste-depo/rocker-bioc3.10-R3.6.3

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rocker-bioc3.10-R3.6.3

Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.10 and my favourite packages preinstalled:

  • XML
  • xml2
  • devtools
  • microbenchmark
  • roxygen2
  • mclust
  • fastcluster
  • ppcor
  • RMySQL
  • igraph
  • rJava
  • pheatmap
  • BiocStyle
  • compEpiTools
  • DESeq2
  • DEXSeq
  • GEOmetadb
  • clusterProfiler
  • msigdbr
  • BSgenome.Hsapiens.UCSC.hg18
  • BSgenome.Hsapiens.UCSC.hg19
  • BSgenome.Mmusculus.UCSC.mm9
  • BSgenome.Mmusculus.UCSC.mm10
  • TxDb.Hsapiens.UCSC.hg18.knownGene
  • TxDb.Hsapiens.UCSC.hg38.knownGene
  • TxDb.Mmusculus.UCSC.mm9.knownGene
  • org.Mm.eg.db
  • recount
  • SRAdb
  • INSPEcT
  • Onassis

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Docker recipe to create RStudio with R 3.6.3, Bioconductor 3.10, and my favorite packages installed

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docker r bioconductor

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GPL-3.0 license
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