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Single cell RNA-seq for Cardiopharyngeal Specification in Ciona

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Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
Clustering.Rmd		Clustering.Rmd
Preprocess.Rmd		Preprocess.Rmd
README.md		README.md
Trajectory.Rmd		Trajectory.Rmd
functions.R		functions.R

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single-cell-ciona

Single cell RNA-seq for Cardiopharyngeal Specification in Ciona

Note: to better reproduce the Rmarkdown output please install Seurat v1.2

The accompany paper is on bioRxiv.

functions.R contains additional functions to run the Rmarkdowns.

Preprocess.Rmd contains preprocessing steps.

Clustering.Rmd contains clustering analyses for all time points.

Trajectory.Rmd contains trajectory analyses for all three trajectories.

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Single cell RNA-seq for Cardiopharyngeal Specification in Ciona

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