pytest-workflow Check

fix: tests and bugs and CI (#187) #577

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Job	Run time
list-tags	4s
pytest_check (arriba)	1m 28s
pytest_check (bwa)	46s
pytest_check (deeptools)	53s
pytest_check (estimate)	31s
pytest_check (fastqc)	57s
pytest_check (flag_filter)	1m 16s
pytest_check (fq)	49s
pytest_check (gatk4)	1m 55s
pytest_check (htseq)	54s
pytest_check (kraken)	51s
pytest_check (librarian)	1m 6s
pytest_check (md5sum)	40s
pytest_check (mosdepth)	50s
pytest_check (multiqc)	1m 16s
pytest_check (ngsderive)	1m 8s
pytest_check (picard)	2m 30s
pytest_check (qualimap)	1m 12s
pytest_check (read_group)	52s
pytest_check (reference)	34s
pytest_check (sambamba)	46s
pytest_check (samtools)	1m 28s
pytest_check (star)	1m 2s
pytest_check (util)	1m 48s
	25m 36s