Further changes: drop vignette, some changes to allEffects.csv

DESCRIPTION

@@ -3,7 +3,7 @@ Package: RSiena
 Type: Package
 Title: Siena - Simulation Investigation for Empirical Network Analysis
 Version: 1.2.32
-Date: 2021-03-14
+Date: 2021-03-16
 Authors@R: c(person("Tom A.B.", "Snijders", role = c("cre", "aut"), email = "[email protected]", comment = c(ORCID = "0000-0003-3157-4157")),
               person("Christian", "Steglich", role = c("aut","ctb"), comment = c(ORCID = "0000-0002-9097-0873")),
               person("Johan", "Koskinen", role = c("aut","ctb"), comment = c(ORCID = "0000-0002-6860-325X")),
@@ -37,8 +37,6 @@ Suggests:
     tools,
     codetools,
     tcltk,
-    knitr,
-    rmarkdown,
     testthat (>= 3.0.0)
 SystemRequirements: GNU make, pandoc
 Description: The main purpose of this package is to perform simulation-based
@@ -57,7 +55,5 @@ LazyData: yes
 Biarch: yes
 NeedsCompilation: yes
 BuildResaveData: no
-BuildVignettes: yes
 URL: http://www.stats.ox.ac.uk/~snijders/siena
-VignetteBuilder: knitr
 Config/testthat/edition: 3

NEWS.md

@@ -2,17 +2,19 @@
 
 ## 
 
-2021-03-14
+2021-03-16
 
 ## Changes in RSiena:
    * New effects: homXTransRecTrip, toU.
    * This implied creation of a new effect class dyadANetNetObjective.
    * sqrt versions for parameter 2 for the effects to, toBack, toRecip,
      from, fromMutual.
+   * Effects to, toU, toBack, toRecip, MixedInXW are dyadic.
    * Reinstated effect MixedInXW, also with sqrt version for parameter 2.
    * Dropped effect to.2 (identical to "to") 
      and MixedInWX (identical to "toBack").
    * Description of toBack and toRecip in manual.
+   * Vignette basicRSiena.Rmd dropped (available at website).
    * Correction in phase3.2 of a bug that sometimes led to an error message 
      if simOnly.
    * effectsDocumentation now also includes gmm effects (at the bottom).

data/allEffects.csv

@@ -433,11 +433,10 @@ nonSymmetricSymmetricSObjective,degree^(1/#) xxxxxx activity,sum outd. x centrd
 nonSymmetricSymmetricObjective,both degrees^(1/#) xxxxxx,sum tied degree^(1/#) products xxxxxx,both,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricSymmetricObjective,duplex xxxxxx outdegree^(1/#) activity,sum dupl. xxxxxx outdeg.^(1/#),doubleOutAct,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricSymmetricSObjective,from xxxxxx agreement,"mixed triplets XWW, W = xxxxxx",from,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricSymmetricSObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
+nonSymmetricSymmetricSObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricSymmetricSObjective,XWX closure of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricSymmetricSObjective,closure of xxxxxx,"mixed triplets W->W=>X, W = xxxxxx",closure,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricSymmetricSObjective,mixed incoming with xxxxxx,"mixed XXW triplets, W = xxxxxx",mixedInXW,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-nonSymmetricSymmetricSObjective,mixed incoming from xxxxxx,"mixed WXX triplets, W = xxxxxx",mixedInWX,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+nonSymmetricSymmetricSObjective,mixed incoming with xxxxxx,"mixed XXW triplets, W = xxxxxx",mixedInXW,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricSymmetricObjective,shared xxxxxx (#) to agreement,"mixed 4cycles WWXX, W = xxxxxx",sharedTo,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricSymmetricSObjective,Jaccard xxxxxx sim.,Jaccard xxxxxx sim.,JoutMix,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricSymmetricSObjective,GWESP(#) xxxxxx,Numb. edgew. shrd. xxxxxx partn.(#),gwespMix,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
@@ -455,15 +454,15 @@ nonSymmetricNonSymmetricObjective,duplex xxxxxx indegree^(1/#) popularity,sum du
 nonSymmetricNonSymmetricObjective,betweenness^(1/#) xxxxxx popularity,sum ind. x betweenn.^(1/#) xxxxxx,betweenPop,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,from xxxxxx agreement,"mixed triplets XWW, W = xxxxxx",from,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,from xxxxxx mutual agr.,"mixed triplets XWW, W=m.xxxxxx",fromMutual,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricNonSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
-nonSymmetricNonSymmetricObjective,xxxxxx (backwards) to agreement,"mixed triplets W(back)XX, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
-nonSymmetricNonSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets W(recip)XX, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
+nonSymmetricNonSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricNonSymmetricObjective,xxxxxx (backwards) to agreement,"mixed triplets W(back)XX, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+nonSymmetricNonSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets W(recip)XX, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,XWX closure of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-nonSymmetricNonSymmetricObjective,XWX closure1 of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX1,FALSE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+nonSymmetricNonSymmetricObjective,XWX closure1 of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX1,FALSE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
 nonSymmetricObjective,"transitive triplets (FORWARD, RECIPROCAL)","Number of transitive triplets (forward, reciprocal)",transTrip.FR,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,TRUE
 nonSymmetricObjective,"transitive triplets (FORWARD, EITHER)","Number of transitive triplets (forward, either)",transTrip.FE,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,TRUE
 nonSymmetricObjective,"transitive triplets (EITHER, EITHER)","Number of transitive triplets (either, either)",transTrip.EE,TRUE,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,TRUE
-nonSymmetricNonSymmetricObjective,XWX closure2 of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX2,FALSE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+nonSymmetricNonSymmetricObjective,XWX closure2 of xxxxxx,"mixed triplets X->W=>X, W = xxxxxx",cl.XWX2,FALSE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
 nonSymmetricNonSymmetricObjective,"WWX closure (EITHER, EITHER) of xxxxxx","mixed triplets W->W=>X (either, either), W = xxxxxx",WWX.EE,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricNonSymmetricObjective,"WWX closure (FORWARD, RECIPROCAL) of xxxxxx","mixed triplets W->W=>X (forward, reciprocal), W = xxxxxx",WWX.FR,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricNonSymmetricObjective,"WXX closure (FORWARD, EITHER) of xxxxxx","mixed triplets W->X=>X (forward, either), W = xxxxxx",WXX.FE,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
@@ -473,8 +472,7 @@ nonSymmetricNonSymmetricObjective,"XWX closure (FORWARD, EITHER) of xxxxxx","mix
 nonSymmetricNonSymmetricObjective,closure of xxxxxx,"mixed triplets W->W=>X, W = xxxxxx",closure,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,cyclic closure of xxxxxx,"mixed cyclic triplets WWX, W = xxxxxx",cyClosure,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,shared incoming xxxxxx,"incoming mixed triplets WWX, W = xxxxxx",sharedIn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
-nonSymmetricNonSymmetricObjective,mixed incoming with xxxxxx,"mixed XXW triplets, W = xxxxxx",mixedInXW,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-nonSymmetricNonSymmetricObjective,mixed incoming from xxxxxx,"mixed WXX triplets, W = xxxxxx",mixedInWX,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+nonSymmetricNonSymmetricObjective,mixed incoming with xxxxxx,"mixed XXW triplets, W = xxxxxx",mixedInXW,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,shared xxxxxx (#) to agreement,"mixed 4cycles WWXX, W = xxxxxx",sharedTo,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
 nonSymmetricNonSymmetricObjective,Jaccard xxxxxx in-sim.,Jaccard xxxxxx in-sim.,JinMix,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
 nonSymmetricNonSymmetricObjective,Jaccard xxxxxx out-sim.,Jaccard xxxxxx out-sim.,JoutMix,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
@@ -485,16 +483,15 @@ nonSymmetricNonSymmetricObjective,GWESP I -> K <- J(#) xxxxxx,Numb. edgew. shrd.
 nonSymmetricNonSymmetricObjective,GWESP I <> K <> J(#) xxxxxx,Numb. edgew. shrd. xxxxxx partn. in AND out twostars(#),gwespRRMix,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,69,objective,NA,NA,0,0,0,0,dyadic,FALSE
 bipartiteNonSymmetricObjective,indegree^(1/#) xxxxxx activity,sum outd. x centrd ind.^(1/#) xxxxxx,inActIntn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,ego,FALSE
 bipartiteNonSymmetricObjective,outdegree^(1/#) xxxxxx activity,sum outd. x centrd degree^(1/#) xxxxxx,outActIntn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
-bipartiteNonSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-bipartiteNonSymmetricObjective,xxxxxx (back) to agreement,"mixed triplets X(back)WW, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-bipartiteNonSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets X(recip)WW, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+bipartiteNonSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+bipartiteNonSymmetricObjective,xxxxxx (back) to agreement,"mixed triplets X(back)WW, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+bipartiteNonSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets X(recip)WW, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 bipartiteNonSymmetricObjective,shared xxxxxx (#) to agreement,"mixed 4cycles WWXX, W = xxxxxx",sharedTo,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
 bipartiteSymmetricObjective,degree^(1/#) xxxxxx activity,sum outd. x centrd degre.^(1/#) xxxxxx,outActIntn,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,2,objective,NA,NA,0,0,0,0,dyadic,FALSE
-bipartiteSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
-bipartiteSymmetricObjective,xxxxxx (backwards) to agreement,"mixed triplets X(backwards)WW, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
-bipartiteSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets X(reciprocal)WW, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
+bipartiteSymmetricObjective,xxxxxx to agreement,"mixed triplets W->X=>X, W = xxxxxx",to,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+bipartiteSymmetricObjective,xxxxxx (backwards) to agreement,"mixed triplets X(backwards)WW, W = xxxxxx",toBack,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
+bipartiteSymmetricObjective,mutual xxxxxx to agreement,"mixed triplets X(reciprocal)WW, W = xxxxxx",toRecip,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 bipartiteSymmetricObjective,shared xxxxxx (#) to agreement,"mixed 4cycles WWXX, W = xxxxxx",sharedTo,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,,FALSE
-bipartiteSymmetricObjective,mixed incoming from xxxxxx,"mixed WXX triplets, W = xxxxxx",mixedInWX,TRUE,xxxxxx,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 continuousFeedback,feedback from yyyyyy,Feedback of yyyyyy on xxxxxx (A_xxxxxx.yyyyyy),feedback,NA,yyyyyy,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 continuousIntercept,intercept,Intercept of xxxxxx (b_xxxxxx),intercept,NA,,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,,FALSE
 continuousOneModeObjective,xxxxxx average alter,beh. xxxxxx average alters,avAlt,NA,yyyyyy,,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,OK,FALSE
@@ -552,5 +549,5 @@ covarBNetNetObjective,yyyyyy alter at dist 2 on xxxxxx (#),yyyyyy alter at dist
 covarBNetNetObjective,yyyyyy tot alt. at dist 2 on xxxxxx (#),yyyyyy tot alt. at dist 2 on xxxxxx (#),totDist2W,TRUE,xxxxxx,yyyyyy,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,dyadic,FALSE
 covarBNetNetObjective,yyyyyy similarity at dist 2 on xxxxxx,yyyyyy similarity at dist 2 on xxxxxx,simDist2W,TRUE,xxxxxx,yyyyyy,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,dyadic,FALSE
 covarABipNetObjective,mixed xxxxxx closure same yyyyyy,"m.tr. W->X=>X, W = xxxxxx, same yyyyyy",sameWXClosure,TRUE,xxxxxx,yyyyyy,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
-dyadANetNetObjective,yyyyyy weighted by zzzzzz to agrmnt,"mixed triplets W->X=>X, W = yyyyyy, weight zzzzzz",toU,TRUE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,ego,FALSE
+dyadANetNetObjective,yyyyyy weighted by zzzzzz to agrmnt,"mixed triplets W->X=>X, W = yyyyyy, weight zzzzzz",toU,TRUE,yyyyyy,zzzzzz,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,0,objective,NA,NA,0,0,0,0,dyadic,FALSE
 tripleNetworkObjective,from xxxxxx agr. weighted by yyyyyy ind,"m.tr. XWW, W = xxxxxx, weight ind. yyyyyy",from.w.ind,TRUE,xxxxxx,yyyyyy,eval,FALSE,FALSE,FALSE,FALSE,FALSE,",",0,1,objective,NA,NA,0,0,0,0,dyadic,FALSE

docs/manual/RSiena.bib

@@ -2799,12 +2799,6 @@ @book{HedstromSwedberg1998
   publisher={Cambridge University Press}
 }
 
-@book{HedstromSwedberg,
-   Author = {Peter Hedstr\"om},
-   Title = {Dissecting the Social: On the Principles of Analytical Sociology},
-   Publisher = {Cambridge University Press},
-   Address = {Cambridge},
-   Year = {2005} }
 
 @article{HedstromYlikoski2010,
   title={Causal mechanisms in the social sciences},
@@ -7184,6 +7178,20 @@ @Article{SnijdersEA10a
   volume =         4,
   pages =    {567--588}}
 
+
+@InCollection{SnijdersKalter2020,
+  author = {Tom A. B. Snijders and Frank Kalter},
+  title = {Religious diversity and social cohesion in German classrooms;
+            {A} micro-macro study based on empirical simulations},
+  booktitle =  {Advances in the sociology of trust and cooperation;
+                {Theory}, experiments, and field studies},
+  chapter= {23},
+  pages = {525--543},
+  year = 2020,
+  publisher = {De Gruyter},
+  address = {Berlin},
+  editor = {Vincent Buskens, Rense Corten, and Chris Snijders}}
+
 @Article{SLT2013,
   title = {A model for the multiplex dynamics of two-mode and one-mode networks,
   with an application to employment preference, friendship, and advice},

docs/manual/classdesign.tex

@@ -315,7 +315,7 @@ \subsection{Actor Sets}
 \subsection{Observed Data for Dependent Variables}
 
 There is a small hierarchy of classes for storing the observed data for
-dependent variables. 
+dependent variables.
 \begin{center}
 \includegraphics[scale=.5]{LongitudinalData.png}
 \end{center}
@@ -518,7 +518,7 @@ \subsubsection{Behavior Variables}
 \item \verb|const| \verb|int| * \nnm{values}(\verb|int| \nnm{observation}).
 \end{itemize}
 
-\paragraph{Calculating Properties.} 
+\paragraph{Calculating Properties.}
 Again, as soon as the observed values and missingness indicators are stored, and
 before the data object can be used for model simulations, the method
 \nnm{calculateProperties} should be called:
@@ -734,7 +734,7 @@ \subsection{Accessor Methods}
 OneModeNetworkLongitudinalData * pFriendshipData =
   pData->pOneModeNetworkData("friendship");
 \end{verbatim}
-If some operation is to be performed for all sub-objects oGenericNetworkEffectf a certain type, one
+If some operation is to be performed for all sub-objects of a certain type, one
 can obtain a reference to the vector, where the subobjects of this type are
 stored by the \nnm{Data} class. For example, the values of all constant
 covariates can be printed as follows:

man/RSiena-package.Rd

@@ -46,7 +46,7 @@ Package \code{"RSiena"} is the official release.
     Package: \tab RSiena\cr
     Type: \tab Package\cr
     Version: \tab 1.2.32\cr
-    Date: \tab 2021-03-14\cr
+    Date: \tab 2021-03-16\cr
     Depends: \tab R (>= 3.0.0)\cr
     Imports: \tab Matrix, lattice, parallel, MASS, methods\cr
     Suggests: \tab xtable, network, tools, codetools, tcltk, knitr, rmarkdown\cr