ssGSVA

This is just a simple wrapper for the single sample method of the GSVA package. It offers a docopt header, so it can be run via the console. The packages should be automatically installed, if necessary please do install any other dependencies.

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Usage: ssGSEA_quickstart.R [options]

 Options: 

          -h --help                          Show this screen. 

          --matrix=<string>                  Specify the path to your gene expression matrix (counts, FPKM, etc). 

          --gene_signature=<string>          Path to the gene signature(s). 

          --verbose=<value>                  If set to T prints all messages [default: F]. 

          --version                          ssGSVA Wrapper 1.0. 

License

This project is licensed under the Apache License 2.0 - see the LICENSE file for details.