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from the L1V3/L1V3_oscli-nested-pulse.omex example in the sed-ml.io repo
factory.executePython()
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 510, in executePython
code = self.toPython()
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 497, in toPython
pysedml = template.render(c)
File "/usr/local/lib/python3.7/site-packages/jinja2/environment.py", line 1090, in render
self.environment.handle_exception()
File "/usr/local/lib/python3.7/site-packages/jinja2/environment.py", line 832, in handle_exception
reraise(*rewrite_traceback_stack(source=source))
File "/usr/local/lib/python3.7/site-packages/jinja2/_compat.py", line 28, in reraise
raise value.with_traceback(tb)
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/templates/tesedml_template.template", line 62, in top-level template code
{{ taskToPython(doc, task) }}
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 697, in taskToPython
return SEDMLCodeFactory.taskTreeToPython(doc, tree=taskTree)
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 808, in taskTreeToPython
taskLines = SEDMLCodeFactory.repeatedTaskToPython(doc, node=node)
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/tesedml.py", line 1207, in repeatedTaskToPython
value = evaluableMathML(r.getMath(), variables=variables)
File "/usr/local/lib/python3.7/site-packages/tellurium/sedml/mathml.py", line 113, in evaluableMathML
astnode.replaceArgument(key, libsbml.parseFormula(str(value)))
AttributeError: 'NoneType' object has no attribute 'replaceArgument'
The text was updated successfully, but these errors were encountered:
jonrkarr
changed the title
tellurium handles some formulas incorrectly
tellurium handles some SED-ML mathematical expressions incorrectly
Apr 21, 2021
from the
L1V3/L1V3_oscli-nested-pulse.omex
example in the sed-ml.io repoThe text was updated successfully, but these errors were encountered: